STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_0853PFAM: regulatory protein TetR; KEGG: plm:Plim_0557 regulatory protein TetR. (212 aa)    
Predicted Functional Partners:
Daes_2222
PFAM: regulatory protein TetR; KEGG: sfu:Sfum_3090 TetR family transcriptional regulator.
  
     0.569
Daes_0852
KEGG: rme:Rmet_1701 secretion protein HlyD; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.566
Daes_0017
PFAM: regulatory protein TetR; KEGG: dsa:Desal_3802 transcriptional regulator, TetR family.
  
     0.520
Daes_0851
KEGG: dvm:DvMF_2163 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein.
     
 0.496
Daes_2815
PFAM: regulatory protein TetR; KEGG: dol:Dole_1323 TetR family transcriptional regulator.
  
     0.452
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.451
Daes_0854
PFAM: Protein of unknown function DUF3313; KEGG: gur:Gura_3853 hypothetical protein.
       0.438
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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