STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_1246KEGG: dat:HRM2_01000 ABC-type transporter, periplamsic substrate binding protein. (311 aa)    
Predicted Functional Partners:
Daes_1248
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dat:HRM2_01020 ABC-type transporter, permease protein (nitrate/sulfonate/bicarbonate transporter).
 
  
 0.951
Daes_1247
KEGG: dat:HRM2_01010 ABC-type transporter, ATP-binding protein (ATPase); PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.934
Daes_3235
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dma:DMR_45990 ABC transporter permease protein.
 
  
 0.798
Daes_3236
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dma:DMR_46000 ABC transporter permease protein.
 
  
 0.749
Daes_3234
Manually curated; PFAM: ABC transporter related; KEGG: dma:DMR_45980 ABC transporter ATP-binding protein; SMART: AAA ATPase.
 
  
 0.702
Daes_0581
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_0856 ABC-type transport system, permease component.
 
  
 0.648
Daes_0580
ABC transporter related protein; KEGG: pca:Pcar_0855 ABC-type transport system, ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.630
Daes_0337
Hypothetical protein; KEGG: dze:Dd1591_4030 putative phage tail fibre protein.
  
     0.537
Daes_1249
PFAM: PhoH family protein; KEGG: dvm:DvMF_0575 PhoH family protein.
     
 0.486
Daes_1245
PFAM: permease; KEGG: dde:Dde_0132 permease.
       0.478
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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