STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_1874SMART: PBS lyase HEAT domain protein repeat-containing protein; KEGG: dsa:Desal_2729 PBS lyase heat domain protein repeat-containing protein. (645 aa)    
Predicted Functional Partners:
Daes_1873
Protein-glutamate O-methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
 
   
 0.847
Daes_1733
KEGG: dsa:Desal_1987 hypothetical protein.
 
   0.804
Daes_2153
KEGG: dsa:Desal_2983 tetratricopeptide domain protein.
 
 
   0.794
Daes_2831
Hypothetical protein; KEGG: dsa:Desal_0800 TPR repeat-containing protein.
 
 
   0.780
Daes_0977
KEGG: dsa:Desal_3029 hypothetical protein.
  
 
   0.779
Daes_3003
KEGG: dsa:Desal_0244 flagellar export protein FliJ; TIGRFAM: flagellar export protein FliJ; PFAM: flagellar export FliJ family protein.
  
     0.772
Daes_2311
KEGG: dma:DMR_32870 hypothetical protein.
  
     0.769
Daes_1360
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.768
Daes_2280
PFAM: Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dsa:Desal_0977 TPR repeat-containing protein.
 
     0.767
Daes_0733
SMART: Tetratricopeptide repeat; KEGG: dsa:Desal_0270 TPR repeat-containing protein.
  
     0.766
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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