STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_1942Hypothetical protein; KEGG: avi:Avi_5782 phosphate permease. (167 aa)    
Predicted Functional Partners:
Daes_1943
Hypothetical protein.
       0.625
Daes_1944
PFAM: protein of unknown function DUF134; KEGG: rru:Rru_A1194 hypothetical protein; Belongs to the UPF0251 family.
       0.412
Daes_1945
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dba:Dbac_2278 protein of unknown function DUF134.
       0.412
Daes_1946
KEGG: sfu:Sfum_3409 cobyrinic acid a,c-diamide synthase.
       0.412
Daes_1947
KEGG: dba:Dbac_2276 cobyrinic acid ac-diamide synthase.
       0.412
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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