STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_2155PFAM: extracellular solute-binding protein family 3; KEGG: dba:Dbac_2973 ABC transporter, periplasmic substrate-binding protein, putative. (254 aa)    
Predicted Functional Partners:
Daes_2156
PFAM: FAD dependent oxidoreductase; KEGG: dps:DP0272 hypothetical protein.
       0.498
Daes_1079
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_02210 amino acid ABC transporter periplasmic protein.
  
     0.484
Daes_2154
Sigma-54 factor interaction domain-containing protein; KEGG: dsa:Desal_2984 sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase.
       0.441
Daes_2157
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dvl:Dvul_0472 hypothetical protein.
 
     0.437
Daes_2860
PFAM: extracellular solute-binding protein family 3; KEGG: dvl:Dvul_1683 hypothetical protein.
  
     0.423
Daes_0526
PFAM: extracellular solute-binding protein family 3; KEGG: dsa:Desal_0670 extracellular solute-binding protein family 3.
  
     0.422
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.