STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_2211PFAM: GCN5-related N-acetyltransferase; KEGG: dat:HRM2_29110 acetyltransferase (GNAT family protein). (163 aa)    
Predicted Functional Partners:
Daes_2210
KEGG: dde:Dde_2477 ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.773
Daes_2209
TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: dsa:Desal_1238 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.577
Daes_2188
PFAM: peptidase M22 glycoprotease; KEGG: drt:Dret_1949 peptidase M22 glycoprotease.
  
 
 0.450
Daes_0582
KEGG: pca:Pcar_0857 ABC-type transport system, periplasmic component.
  
     0.426
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.423
Daes_2208
KEGG: dsa:Desal_3692 hypothetical protein.
       0.406
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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