STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_2438TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dma:DMR_23810 putative sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein. (361 aa)    
Predicted Functional Partners:
Daes_1133
KEGG: lbf:LBF_0920 two component response regulator sensor histidine kinase/response regulator subunits; PFAM: response regulator receiver; Diverse 7TM receptor transmembrane region; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; PAS domain containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein.
 
 
 0.944
Daes_0029
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS fold-4 domain protein; PAS fold domain protein; GAF domain protein; KEGG: dma:DMR_43850 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; GAF domain protein.
 
 
 0.930
Daes_2520
KEGG: dsa:Desal_1119 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
 
 0.929
Daes_3069
Response regulator receiver; KEGG: dsa:Desal_3695 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver.
 
 
 0.917
Daes_1872
KEGG: dvm:DvMF_0775 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
 
 
 0.912
Daes_1117
Response regulator receiver; KEGG: dsa:Desal_3050 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain-containing protein; SMART: response regulator receiver; transcriptional regulator domain-containing protein.
 
 
 0.911
Daes_2655
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; extracellular solute-binding protein family 3; response regulator receiver; KEGG: dma:DMR_34360 putative two-component hybrid sensor and regulator; SMART: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; extracellular solute-binding protein family 3; PAS domain containing protein; PAC repeat-containing protein.
 
 
 0.901
Daes_1001
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; 5TM Receptors of the LytS-YhcK type transmembrane region; PAS fold-4 domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: dma:DMR_08780 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein.
 
 
 0.894
Daes_2523
ATP-binding region ATPase domain protein; KEGG: dma:DMR_02660 two-component hybrid sensor and regulator; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; response regulator receiver.
 
 
0.893
Daes_3078
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: dma:DMR_41710 two-component hybrid sensor and regulator; SMART: response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein.
 
 
 0.893
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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