STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_2490PFAM: phosphoesterase RecJ domain protein; KEGG: dsa:Desal_2962 phosphoesterase RecJ domain protein. (331 aa)    
Predicted Functional Partners:
Daes_2488
KEGG: dvl:Dvul_2481 hypothetical protein.
       0.803
Daes_2489
PFAM: cobalbumin biosynthesis protein; KEGG: dsa:Desal_2963 cobalbumin biosynthesis protein.
       0.803
Daes_2275
KEGG: dsa:Desal_0982 metal dependent phophohydrolase; TIGRFAM: metal dependent phophohydrolase; SMART: metal-dependent phosphohydrolase HD region.
 
   
 0.705
Daes_1047
PFAM: ribonuclease II; KEGG: dsa:Desal_1456 ribonuclease II.
 
   
 0.656
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.656
rbfA
Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.
  
  
 0.639
Daes_2079
KEGG: dsa:Desal_2840 hypothetical protein.
 
     0.591
Daes_2487
KEGG: dvl:Dvul_2482 hypothetical protein.
       0.583
Daes_1350
PFAM: protein of unknown function DUF181; Tetratricopeptide TPR_1 repeat-containing protein; KEGG: dsa:Desal_2610 protein of unknown function DUF181.
  
     0.572
Daes_1534
KEGG: dsa:Desal_1971 hypothetical protein.
  
     0.568
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.