STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_2550TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: dma:DMR_38890 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (252 aa)    
Predicted Functional Partners:
Daes_2554
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
 0.986
Daes_1973
Transketolase domain-containing protein; KEGG: mag:amb0066 putative transketolase N-terminal section; manually curated; PFAM: Transketolase domain-containing protein.
  
 0.982
Daes_0076
PFAM: Transketolase domain-containing protein; KEGG: glo:Glov_0795 transketolase domain protein.
  
 0.975
Daes_3138
TIGRFAM: transketolase; PFAM: Transketolase domain-containing protein; Transketolase central region; KEGG: dsa:Desal_3668 transketolase; SMART: Transketolase central region; Belongs to the transketolase family.
 0.968
Daes_1972
Transketolase domain-containing protein; KEGG: mag:amb0067 putative transketolase C-terminal section; PFAM: Transketolase domain-containing protein; Transketolase central region; SMART: Transketolase central region.
 
 
 0.950
Daes_0077
KEGG: glo:Glov_0796 transketolase central region; PFAM: Transketolase central region; Transketolase domain-containing protein; SMART: Transketolase central region.
 
 
 0.940
Daes_3137
KEGG: drt:Dret_0852 ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase.
 
 
 0.938
Daes_2209
TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: dsa:Desal_1238 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
  
 
0.901
Daes_2551
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis.
  
  
 0.816
pgk-2
KEGG: nhl:Nhal_3448 phosphoglycerate kinase; PFAM: phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
  
 
 0.804
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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