Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Daes_2556 | Daes_2557 | KEGG: cyn:Cyan7425_3043 geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding. | PFAM: Integrase catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB. | 0.625 |
Daes_2556 | Daes_2558 | KEGG: cyn:Cyan7425_3043 geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding. | PFAM: transposase IS3/IS911 family protein; KEGG: cko:CKO_00856 hypothetical protein. | 0.625 |
Daes_2557 | Daes_2556 | PFAM: Integrase catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB. | KEGG: cyn:Cyan7425_3043 geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding. | 0.625 |
Daes_2557 | Daes_2558 | PFAM: Integrase catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB. | PFAM: transposase IS3/IS911 family protein; KEGG: cko:CKO_00856 hypothetical protein. | 0.778 |
Daes_2558 | Daes_2556 | PFAM: transposase IS3/IS911 family protein; KEGG: cko:CKO_00856 hypothetical protein. | KEGG: cyn:Cyan7425_3043 geranylgeranyl reductase; TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding. | 0.625 |
Daes_2558 | Daes_2557 | PFAM: transposase IS3/IS911 family protein; KEGG: cko:CKO_00856 hypothetical protein. | PFAM: Integrase catalytic region; KEGG: dvu:DVU2010 ISD1, transposase OrfB. | 0.778 |