STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_2624PFAM: integrase family protein; TOBE domain-containing protein; KEGG: dsa:Desal_0307 TOBE domain protein. (352 aa)    
Predicted Functional Partners:
Daes_2622
Molybdate ABC transporter, inner membrane subunit; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
  
  
 0.734
Daes_2623
KEGG: dsa:Desal_0306 molybdenum ABC transporter, periplasmic molybdate-binding protein; TIGRFAM: molybdenum ABC transporter, periplasmic molybdate-binding protein; PFAM: extracellular solute-binding protein family 1.
  
  
 0.714
Daes_2621
KEGG: dsa:Desal_0304 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
   
 
 0.651
Daes_0863
PFAM: Cytochrome c, class III, conserved region; KEGG: dvm:DvMF_2598 cytochrome c class III.
  
     0.569
Daes_2636
TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; KEGG: dde:Dde_3715 multi-sensor signal transduction histidine kinase; SMART: response regulator receiver; PAC repeat-containing protein; PAS domain containing protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein.
  
   
 0.553
Daes_2301
PFAM: Ribosomal small subunit Rsm22; KEGG: dsa:Desal_2804 ribosomal small subunit Rsm22.
  
     0.548
Daes_0868
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: dvm:DvMF_2593 protein of unknown function DUF224 cysteine-rich region domain protein.
 
     0.544
Daes_1340
PFAM: Cytochrome c, class III, conserved region; KEGG: dba:Dbac_1961 cytochrome c family protein.
  
     0.541
Daes_2644
KEGG: dvl:Dvul_2712 hypothetical protein.
  
     0.500
Daes_2845
PFAM: HesB/YadR/YfhF-family protein; KEGG: dvm:DvMF_0158 HesB-like domain-containing protein; Belongs to the HesB/IscA family.
  
     0.496
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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