Daes_2720 protein (Pseudodesulfovibrio aespoeensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Daes_2720

KEGG: paa:Paes_1462 beta-phosphoglucomutase family hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase. (1059 aa)

Predicted Functional Partners:

Daes_2721

0.771

Daes_2722

0.671

Daes_2709

0.655

Daes_1139

0.639

Daes_2869

0.638

Daes_2948

0.589

Daes_1138

0.567

Daes_0641

0.565

Daes_1140

0.545

Daes_2718

0.529

Your Current Organism:

Pseudodesulfovibrio aespoeensis

NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daes_0641	Daes_1138	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ddc:Dd586_0677 binding-protein-dependent transport systems inner membrane component.	PFAM: extracellular solute-binding protein family 1; KEGG: rpa:RPA1395 trehalose/maltose binding protein.	0.919
Daes_0641	Daes_1140	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ddc:Dd586_0677 binding-protein-dependent transport systems inner membrane component.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1397 putative sugar ABC transporter, permease protein.	0.984
Daes_0641	Daes_2709	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ddc:Dd586_0677 binding-protein-dependent transport systems inner membrane component.	TIGRFAM: alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.	0.520
Daes_0641	Daes_2720	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ddc:Dd586_0677 binding-protein-dependent transport systems inner membrane component.	KEGG: paa:Paes_1462 beta-phosphoglucomutase family hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase.	0.565
Daes_1138	Daes_0641	PFAM: extracellular solute-binding protein family 1; KEGG: rpa:RPA1395 trehalose/maltose binding protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ddc:Dd586_0677 binding-protein-dependent transport systems inner membrane component.	0.919
Daes_1138	Daes_1139	PFAM: extracellular solute-binding protein family 1; KEGG: rpa:RPA1395 trehalose/maltose binding protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1396 sugar ABC transporter permease.	0.985
Daes_1138	Daes_1140	PFAM: extracellular solute-binding protein family 1; KEGG: rpa:RPA1395 trehalose/maltose binding protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1397 putative sugar ABC transporter, permease protein.	0.987
Daes_1138	Daes_2720	PFAM: extracellular solute-binding protein family 1; KEGG: rpa:RPA1395 trehalose/maltose binding protein.	KEGG: paa:Paes_1462 beta-phosphoglucomutase family hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase.	0.567
Daes_1139	Daes_1138	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1396 sugar ABC transporter permease.	PFAM: extracellular solute-binding protein family 1; KEGG: rpa:RPA1395 trehalose/maltose binding protein.	0.985
Daes_1139	Daes_1140	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1396 sugar ABC transporter permease.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1397 putative sugar ABC transporter, permease protein.	0.999
Daes_1139	Daes_2709	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1396 sugar ABC transporter permease.	TIGRFAM: alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.	0.520
Daes_1139	Daes_2720	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1396 sugar ABC transporter permease.	KEGG: paa:Paes_1462 beta-phosphoglucomutase family hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase.	0.639
Daes_1140	Daes_0641	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1397 putative sugar ABC transporter, permease protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ddc:Dd586_0677 binding-protein-dependent transport systems inner membrane component.	0.984
Daes_1140	Daes_1138	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1397 putative sugar ABC transporter, permease protein.	PFAM: extracellular solute-binding protein family 1; KEGG: rpa:RPA1395 trehalose/maltose binding protein.	0.987
Daes_1140	Daes_1139	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1397 putative sugar ABC transporter, permease protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1396 sugar ABC transporter permease.	0.999
Daes_1140	Daes_2720	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1397 putative sugar ABC transporter, permease protein.	KEGG: paa:Paes_1462 beta-phosphoglucomutase family hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase.	0.545
Daes_2709	Daes_0641	TIGRFAM: alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ddc:Dd586_0677 binding-protein-dependent transport systems inner membrane component.	0.520
Daes_2709	Daes_1139	TIGRFAM: alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1396 sugar ABC transporter permease.	0.520
Daes_2709	Daes_2720	TIGRFAM: alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.	KEGG: paa:Paes_1462 beta-phosphoglucomutase family hydrolase; TIGRFAM: beta-phosphoglucomutase family hydrolase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; Haloacid dehalogenase domain protein hydrolase.	0.655
Daes_2709	Daes_2721	TIGRFAM: alpha-glucan phosphorylase; KEGG: sat:SYN_00879 glycogen synthase/glycogen phosphorylase; PFAM: glycogen synthase; glycosyl transferase family 35.	KEGG: paa:Paes_1461 hypothetical protein.	0.460

page 1 of 3

Server load: low (24%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About