STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_2893KEGG: dba:Dbac_0980 hypothetical protein. (105 aa)    
Predicted Functional Partners:
Daes_2890
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: dba:Dbac_0977 redoxin domain protein.
       0.803
Daes_2891
KEGG: dba:Dbac_0978 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; GAF domain protein.
       0.803
Daes_2892
PFAM: methylamine utilisation MauE; KEGG: dba:Dbac_0979 DoxX family protein.
       0.803
Daes_2889
Response regulator receiver; KEGG: dba:Dbac_0976 anti-sigma-factor antagonist; PFAM: response regulator receiver; Sulfate transporter/antisigma-factor antagonist STAS; SMART: response regulator receiver.
       0.671
Daes_2894
TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; KEGG: dma:DMR_27250 sensor histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein.
       0.458
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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