STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_3156PFAM: protein of unknown function DUF152; KEGG: dvl:Dvul_2619 hypothetical protein. (254 aa)    
Predicted Functional Partners:
Daes_3155
KEGG: dsa:Desal_3715 5-formyltetrahydrofolate cyclo-ligase; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
     
 0.826
Daes_0255
Alanine racemase domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
  
  
 0.806
Daes_3151
KEGG: dsa:Desal_0283 hypothetical protein.
       0.523
Daes_3154
Sigma-54 factor interaction domain-containing protein; KEGG: dsa:Desal_3769 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase.
       0.514
Daes_3152
KEGG: xom:XOO_4334 hypothetical protein.
       0.502
Daes_3153
PFAM: SMC domain protein; KEGG: ana:alr0507 hypothetical protein.
       0.502
Daes_1386
KEGG: sun:SUN_1302 hypothetical protein.
 
     0.421
Daes_3157
KEGG: cwo:Cwoe_5162 beta-lactamase domain protein; PFAM: Sterol-binding domain protein; SMART: beta-lactamase domain protein.
       0.410
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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