Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daes_3208PFAM: integrase family protein; KEGG: dol:Dole_2906 integrase family protein; Belongs to the 'phage' integrase family. (355 aa)    
Predicted Functional Partners:
Daes_0325
Hypothetical protein; KEGG: mmu:100041170 predicted gene 3178.
  
   
 0.685
Daes_0307
PFAM: GCN5-related N-acetyltransferase; KEGG: mgm:Mmc1_3313 hypothetical protein.
  
   
 0.668
Daes_1994
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: mei:Msip34_0129 hypothetical protein.
  
     0.648
Daes_2954
KEGG: svo:SVI_0385 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
  
     0.631
Daes_1965
KEGG: dsa:Desal_0573 hypothetical protein.
 
     0.600
Daes_0320
KEGG: azl:AZL_025450 hypothetical protein.
  
     0.596
Daes_0243
KEGG: dsa:Desal_3428 putative transcriptional regulator, MerR family.
  
     0.528
Daes_2874
PFAM: phosphoribosyltransferase; KEGG: dma:DMR_11140 competence protein F.
   
    0.520
Daes_1472
PFAM: protein of unknown function DUF1239; KEGG: dsa:Desal_2258 protein of unknown function DUF1239.
  
     0.517
Daes_0952
PFAM: Prephenate dehydrogenase; KEGG: dsa:Desal_3061 prephenate dehydrogenase.
  
    0.510
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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