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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_3208PFAM: integrase family protein; KEGG: dol:Dole_2906 integrase family protein; Belongs to the 'phage' integrase family. (355 aa)    
Predicted Functional Partners:
Daes_0325
Hypothetical protein; KEGG: mmu:100041170 predicted gene 3178.
  
     0.685
Daes_0307
PFAM: GCN5-related N-acetyltransferase; KEGG: mgm:Mmc1_3313 hypothetical protein.
  
   
 0.667
Daes_1994
PFAM: Capsule polysaccharide biosynthesis protein; KEGG: mei:Msip34_0129 hypothetical protein.
  
     0.648
Daes_2954
KEGG: svo:SVI_0385 rhodanese domain protein; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein.
  
   
 0.631
Daes_1965
KEGG: dsa:Desal_0573 hypothetical protein.
 
     0.601
Daes_0320
KEGG: azl:AZL_025450 hypothetical protein.
  
     0.596
Daes_0243
KEGG: dsa:Desal_3428 putative transcriptional regulator, MerR family.
  
   
 0.530
Daes_1472
PFAM: protein of unknown function DUF1239; KEGG: dsa:Desal_2258 protein of unknown function DUF1239.
  
     0.517
Daes_2874
PFAM: phosphoribosyltransferase; KEGG: dma:DMR_11140 competence protein F.
   
    0.506
Daes_3161
PFAM: Sporulation domain-containing protein; KEGG: pol:Bpro_1605 sporulation related.
  
     0.500
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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