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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daes_3209PFAM: Lipid A 3-O-deacylase-related; KEGG: pla:Plav_3239 hypothetical protein. (185 aa)    
Predicted Functional Partners:
Daes_2277
Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
     
  0.900
lpxK
Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
     
  0.900
Daes_3210
KEGG: dat:HRM2_43620 hypothetical protein.
       0.603
Daes_3211
KEGG: dsa:Desal_0042 protein of unknown function DUF399; PFAM: protein of unknown function DUF399; SMART: PDZ/DHR/GLGF domain protein.
       0.603
Daes_3212
KEGG: mbu:Mbur_0592 hypothetical protein.
       0.603
Daes_2916
PFAM: Flp/Fap pilin component; KEGG: nar:Saro_1905 Flp/Fap pilin component.
  
     0.486
Daes_3213
PFAM: transposase IS116/IS110/IS902 family protein; KEGG: gme:Gmet_2565 transposase IS116/IS110/IS902.
       0.421
Daes_1848
PFAM: ROSMUCR transcriptional regulator; KEGG: dsa:Desal_3581 transcriptional regulator, MucR family.
  
     0.411
Your Current Organism:
Pseudodesulfovibrio aespoeensis
NCBI taxonomy Id: 643562
Other names: Desulfovibrio aespoeensis Aspo-2, Desulfovibrio aespoeensis DSM 10631, P. aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis Aspo-2, Pseudodesulfovibrio aespoeensis DSM 10631
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