STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0026KEGG: GSVIVT00003134001; hypothetical protein LOC100241300; SPTR: Q09HM7 Putative F-box and leucine-rich repeat protein. (88 aa)    
Predicted Functional Partners:
Slip_0025
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterProIPR019734:IPR013026:IPR011990:IPR001173:IPR 001440:IPR013105; KEGG: adg:Adeg_0252 glycosyl transferase family 2; PFAM: glycosyl transferase family 2; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; SPTR: C9RAZ4 Glycosyl transferase family 2; PFAM: Glycosyl transferase family 2; Tetratricopeptide repeat.
       0.746
Slip_0027
KEGG: chy:CHY_2613 hypothetical protein; SPTR: C6PF66 Putative uncharacterized protein.
       0.603
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.