STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0030Glutamine--scyllo-inositol transaminase; COGs: COG0399 pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; InterPro IPR000653:IPR015424:IPR015421:IPR015422; KEGG: dae:Dtox_1135 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; PRIAM: Glutamine--scyllo-inositol transaminase; SPTR: C8W4F3 Glutamine--scyllo-inositol transaminase; manually curated; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase family; Belongs to the DegT/DnrJ/EryC1 family. (362 aa)    
Predicted Functional Partners:
Slip_0029
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR016040:IPR000683:IPR004104; KEGG: ttr:Tter_2814 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; Oxidoreductase domain; SPTR: D1CIX8 Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
  
 0.992
Slip_0031
Transferase hexapeptide repeat containing protein; COGs: COG1044 UDP-3-O-(3-hydroxymyristoyl); InterPro IPR011004:IPR001451; KEGG: tpe:Tpen_0895 hexapaptide repeat-containing transferase; PFAM: transferase hexapeptide repeat containing protein; SPTR: B5IQV0 Bacterial transferase hexapeptide repeat protein; PFAM: Bacterial transferase hexapeptide (three repeats).
 
 0.965
Slip_0161
Polysaccharide biosynthesis protein CapD; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR016040:IPR003869; KEGG: swo:Swol_0128 hypothetical protein; PFAM: polysaccharide biosynthesis protein CapD; SPTR: Q0B0M1 Putative uncharacterized protein; manually curated; PFAM: Polysaccharide biosynthesis protein.
  
 0.853
Slip_1506
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR007267:IPR001173:IPR013838; KEGG: swo:Swol_1908 cell wall biosynthesis glycosyltransferase-like protein; PFAM: glycosyl transferase family 2; GtrA family protein; SPTR: Q0AVP9 Glycosyltransferases involved in cell wall biogenesis-like protein; PFAM: GtrA-like protein; Glycosyl transferase family 2.
  
  
 0.853
Slip_0164
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterProIPR000888:IPR016040:IPR011051:IPR014710:IPR 001509; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: A4J8Y2 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family; WxcM-like, C-terminal.
  
  
 0.815
Slip_0163
Polysaccharide biosynthesis protein CapD; COGs: COG1086 nucleoside-diphosphate sugar epimerase; InterPro IPR016040:IPR003869:IPR013692; KEGG: drm:Dred_3033 polysaccharide biosynthesis protein CapD; PFAM: polysaccharide biosynthesis protein CapD; Polysaccharide biosynthesis domain protein; SPTR: A4J8Y3 Polysaccharide biosynthesis protein CapD; PFAM: Polysaccharide biosynthesis protein; Polysaccharide biosynthesis protein C-terminal.
 
  
 0.740
Slip_0517
Nucleotidyl transferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterProIPR016055:IPR011004:IPR005835:IPR001451:IPR 005844; KEGG: dau:Daud_1040 nucleotidyl transferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; SPTR: B1I3K9 Nucleotidyl transferase; PFAM: Nucleotidyl transferase; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha [...]
  
  
 0.632
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
  
 0.610
Slip_2315
Methicillin resistance protein; COGs: COG2348 Uncharacterized protein involved in methicillin resistance; InterPro IPR016181:IPR003447; KEGG: swo:Swol_2417 methicillin resistance protein; PFAM: Methicillin resistance protein; SPTR: Q0AU98 Methicillin resistance protein; PFAM: FemAB family.
      0.578
Slip_0762
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2613 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D0MFZ7 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1; Mannose-6-phosphate isomerase.
  
  
 0.568
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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