STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0320COGs: COG4475 conserved hypothetical protein; InterPro IPR006340; KEGG: sth:STH78 hypothetical protein; PFAM: conserved hypothetical protein; SPTR: Q67TD0 UPF0340 protein STH78; PFAM: Protein of unknown function (DUF436); TIGRFAM: conserved hypothetical protein TIGR01440; Belongs to the UPF0340 family. (185 aa)    
Predicted Functional Partners:
Slip_2294
Sugar-phosphate isomerase, RpiB/LacA/LacB family; COGs: COG0698 Ribose 5-phosphate isomerase RpiB; InterPro IPR003500:IPR004785; KEGG: chy:CHY_2558 ribose-5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; PRIAM: Ribose-5-phosphate isomerase; SPTR: Q3A933 Ribose 5-phosphate isomerase B; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/Galactose Isomerase; TIGRFAM: ribose 5-phosphate isomerase B; sugar-phosphate isomerases, RpiB/LacA/LacB family.
 
  
 0.950
prmC
protein-(glutamine-N5) methyltransferase, release factor-specific; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
      0.630
Slip_0321
PfkB domain protein; COGs: COG0524 Sugar kinase ribokinase family; InterPro IPR002173:IPR011611; KEGG: tne:Tneu_0070 ribokinase-like domain-containing protein; PFAM: PfkB domain protein; SPTR: B0NFD1 Putative uncharacterized protein; PFAM: pfkB family carbohydrate kinase.
       0.598
Slip_0322
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: str:Sterm_3044 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: B0NFD0 Putative uncharacterized protein; PFAM: family.
 
     0.586
Slip_0319
COGs: COG1775 Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit BcrC/BadD/HgdB; InterPro IPR010327; KEGG: swo:Swol_0410 (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative; PFAM: 2-hydroxyglutaryl-CoA dehydratase D-component; SPTR: Q0AZV6 (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit, putative; PFAM: 2-hydroxyglutaryl-CoA dehydratase, D-component.
       0.533
Slip_0317
COGs: COG2313 Uncharacterized protein involved in pigment biosynthesis; InterPro IPR007342; KEGG: rce:RC1_0645 indigoidine synthase A like protein; SPTR: B0G4Q9 Putative uncharacterized protein; PFAM: Indigoidine synthase A like protein.
       0.461
Slip_0318
COGs: COG0407 Uroporphyrinogen-III decarboxylase; InterPro IPR000257; KEGG: swo:Swol_0417 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); SPTR: Q0AZU9 Uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); TIGRFAM: methyltransferase, MtaA/CmuA family; Belongs to the uroporphyrinogen decarboxylase family.
       0.461
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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