STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0393RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (235 aa)    
Predicted Functional Partners:
Slip_0441
Sporulation transcriptional activator Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
   
 0.843
Slip_0440
Stage IV sporulation protein B; InterPro IPR014219:IPR001478:IPR009003:IPR008763; KEGG: swo:Swol_0589 hypothetical protein; PFAM: peptidase S55 SpoIVB; PRIAM: SpoIVB peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Q0AZD6 SpoIVB peptidase. Serine peptidase. MEROPS family S55; TIGRFAM: stage IV sporulation protein B; PFAM: SpoIVB peptidase S55; TIGRFAM: stage IV sporulation protein B.
  
   
 0.780
Slip_1470
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.773
Slip_2276
Sporulation transcriptional regulator SpoIIID; InterPro IPR014208:IPR018356; KEGG: swo:Swol_2375 stage III sporulation protein D; SPTR: Q0AUE0 Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID; PFAM: Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID.
  
   
 0.772
Slip_0420
KEGG: swo:Swol_0556 hypothetical protein; SPTR: Q0AZG4 Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AG.
 
     0.770
Slip_0529
InterPro IPR010894; KEGG: swo:Swol_0627 stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; SPTR: Q0AZ98 Stage V sporulation AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD.
  
     0.770
Slip_0528
Stage V sporulation protein AC; InterPro IPR014203:IPR005562; KEGG: drm:Dred_1106 SpoVA protein; PFAM: SpoVA protein; SPTR: A4J3I8 SpoVA protein; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
  
     0.769
Slip_0530
Stage V sporulation protein AE; InterPro IPR014204:IPR005562; KEGG: swo:Swol_0628 SpoVA protein; PFAM: SpoVA protein; SPTR: Q0AZ97 SpoVA protein; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AE.
  
     0.765
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
     0.765
Slip_0414
Stage III sporulation protein AA; COGs: COG3854 conserved hypothetical protein; InterPro IPR014217:IPR003593; KEGG: swo:Swol_0550 stage III sporulation protein spoIIIAA; SMART: AAA ATPase; SPTR: Q0AZH0 Stage III sporulation protein spoIIIAA; TIGRFAM: stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA.
 
     0.761
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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