STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0411KEGG: swo:Swol_0547 hypothetical protein; SPTR: Q0AZH3 Putative uncharacterized protein. (156 aa)    
Predicted Functional Partners:
Slip_0723
Sporulation protein YunB; InterPro IPR019061:IPR014197; KEGG: swo:Swol_0931 hypothetical protein; PFAM: Sporulation protein YunB-like; SPTR: Q0AYF7 Putative uncharacterized protein; TIGRFAM: sporulation protein YunB; manually curated; PFAM: Sporulation protein YunB (Spo_YunB); TIGRFAM: sporulation protein YunB.
  
     0.675
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
       0.663
Slip_0832
KEGG: swo:Swol_0963 hypothetical protein; SPTR: Q0AYC6 Putative uncharacterized protein.
  
     0.626
Slip_0409
Peptidase M24; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR001131:IPR000994:IPR000587; KEGG: swo:Swol_0545 aminopeptidase P; PFAM: peptidase M24; creatinase; SPTR: Q0AZH5 Aminopeptidase P; PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain; Belongs to the peptidase M24B family.
       0.591
Slip_0428
Peptidase M22 glycoprotease; COGs: COG0533 Metal-dependent protease with possible chaperone activity; InterPro IPR017860:IPR000905:IPR017861; KEGG: swo:Swol_0565 hypothetical protein; PFAM: peptidase M22 glycoprotease; SPTR: Q0AZF6 Putative uncharacterized protein; PFAM: Glycoprotease family; TIGRFAM: metalloendopeptidase, putative, glycoprotease family.
 
     0.521
Slip_0444
KEGG: swo:Swol_0592 hypothetical protein; SPTR: Q0AZD3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3186).
  
     0.514
Slip_1452
InterPro IPR017850; KEGG: drm:Dred_2201 hypothetical protein; SPTR: A4J6L3 Putative uncharacterized protein.
  
     0.491
Slip_0057
Sporulation lipoprotein YhcN/YlaJ; InterPro IPR019076; KEGG: chy:CHY_1593 putative lipoprotein; PFAM: Sporulation lipoprotein YhcN/YlaJ-like; SPTR: Q3ABR3 Putative lipoprotein; PFAM: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); TIGRFAM: sporulation lipoprotein, YhcN/YlaJ family.
  
     0.488
Slip_1477
Protein of unknown function DUF1614; InterPro IPR011672; KEGG: swo:Swol_1340 hypothetical protein; PFAM: protein of unknown function DUF1614; SPTR: Q0AXA6 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1614).
  
     0.468
aroQ
3-dehydroquinate dehydratase, type II; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
       0.462
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.