STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0491Stage II sporulation protein M; InterPro IPR014196:IPR018062:IPR002798; KEGG: swo:Swol_0605 uncharacterized membrane protein; PFAM: protein of unknown function DUF95 transmembrane; SPTR: Q0AZC0 Uncharacterized membrane protein; TIGRFAM: stage II sporulation protein M; PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M. (205 aa)    
Predicted Functional Partners:
Slip_0415
Sporulation stage III protein AB; InterPro IPR014198; KEGG: swo:Swol_0551 hypothetical protein; PFAM: Sporulation stage III protein AB; SPTR: Q0AZG9 Putative uncharacterized protein; PFAM: Stage III sporulation protein AB (spore_III_AB); TIGRFAM: stage III sporulation protein AB.
  
  
 0.905
Slip_0418
Stage III sporulation protein AE; InterPro IPR014194; KEGG: swo:Swol_0554 hypothetical protein; PFAM: Sporulation stage III protein AE; SPTR: Q0AZG6 Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
  
 0.861
Slip_1642
Sporulation protein YqfC; InterPro IPR009877; KEGG: swo:Swol_1568 hypothetical protein; PFAM: protein of unknown function DUF1429; SPTR: Q0AWN3 Putative uncharacterized protein; TIGRFAM: sporulation protein YqfC; PFAM: YabP family; TIGRFAM: sporulation protein YqfC.
  
   
 0.832
Slip_0417
Stage III sporulation protein AD; InterPro IPR014211; KEGG: swo:Swol_0553 putative sporulation protein; PFAM: Sporulation stage III protein AD; SPTR: Q0AZG7 Putative sporulation protein; TIGRFAM: stage III sporulation protein AD; PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AD.
  
  
 0.829
Slip_0126
Protein serine/threonine phosphatase; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR001932:IPR010822:IPR014221; KEGG: swo:Swol_0093 phosphoprotein phosphatase; PFAM: Stage II sporulation E family protein; PRIAM: Phosphoprotein phosphatase; SMART: protein phosphatase 2C domain protein; SPTR: Q0B0Q4 Phosphoprotein phosphatase; TIGRFAM: stage II sporulation protein E; PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: stage II sporulation protein E.
  
   
 0.825
Slip_0806
Peptidase U4 sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.810
Slip_0899
Sporulation integral membrane protein YlbJ; COGs: COG3314 conserved hypothetical protein; InterPro IPR011642:IPR014226; KEGG: swo:Swol_0764 hypothetical protein; PFAM: nucleoside recognition domain protein; SPTR: Q0AYW9 Putative uncharacterized protein; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: Nucleoside recognition; TIGRFAM: sporulation integral membrane protein YlbJ.
  
   
 0.779
Slip_0295
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: swo:Swol_0077 hypothetical protein; PFAM: spore germination B3 GerAC family protein; SPTR: Q0B0S0 Putative uncharacterized protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
  
     0.758
Slip_0440
Stage IV sporulation protein B; InterPro IPR014219:IPR001478:IPR009003:IPR008763; KEGG: swo:Swol_0589 hypothetical protein; PFAM: peptidase S55 SpoIVB; PRIAM: SpoIVB peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Q0AZD6 SpoIVB peptidase. Serine peptidase. MEROPS family S55; TIGRFAM: stage IV sporulation protein B; PFAM: SpoIVB peptidase S55; TIGRFAM: stage IV sporulation protein B.
 
   
 0.758
Slip_0292
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: swo:Swol_0077 hypothetical protein; PFAM: spore germination B3 GerAC family protein; SPTR: Q0B0S0 Putative uncharacterized protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
  
     0.753
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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