STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0552Sporulation protein YtfJ; COGs: COG3874 conserved hypothetical protein; InterPro IPR014229; KEGG: swo:Swol_1414 hypothetical protein; PFAM: Sporulation protein YtfJ; SPTR: Q0AX33 Putative uncharacterized protein; TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ (Spore_YtfJ); TIGRFAM: sporulation protein YtfJ. (142 aa)    
Predicted Functional Partners:
Slip_0899
Sporulation integral membrane protein YlbJ; COGs: COG3314 conserved hypothetical protein; InterPro IPR011642:IPR014226; KEGG: swo:Swol_0764 hypothetical protein; PFAM: nucleoside recognition domain protein; SPTR: Q0AYW9 Putative uncharacterized protein; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: Nucleoside recognition; TIGRFAM: sporulation integral membrane protein YlbJ.
  
    0.768
Slip_0810
Sporulation protein, YlmC/YmxH family; InterPro IPR011033:IPR007903:IPR014238; KEGG: swo:Swol_0948 hypothetical protein; PFAM: PRC-barrel domain protein; SPTR: Q0AYE1 Putative uncharacterized protein; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain; TIGRFAM: sporulation protein, YlmC/YmxH family.
  
  
 0.767
Slip_0295
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: swo:Swol_0077 hypothetical protein; PFAM: spore germination B3 GerAC family protein; SPTR: Q0B0S0 Putative uncharacterized protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
  
     0.752
Slip_1064
InterPro IPR008844; KEGG: adg:Adeg_0298 germination protein, Ger(X)C family; PFAM: spore germination B3 GerAC family protein; SPTR: C9RB34 Germination protein, Ger(X)C family; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
  
     0.749
Slip_0723
Sporulation protein YunB; InterPro IPR019061:IPR014197; KEGG: swo:Swol_0931 hypothetical protein; PFAM: Sporulation protein YunB-like; SPTR: Q0AYF7 Putative uncharacterized protein; TIGRFAM: sporulation protein YunB; manually curated; PFAM: Sporulation protein YunB (Spo_YunB); TIGRFAM: sporulation protein YunB.
  
   
 0.748
Slip_0296
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: swo:Swol_0077 hypothetical protein; PFAM: spore germination B3 GerAC family protein; SPTR: Q0B0S0 Putative uncharacterized protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
  
     0.745
Slip_0292
Germination protein, Ger(x)C family; InterPro IPR008844; KEGG: swo:Swol_0077 hypothetical protein; PFAM: spore germination B3 GerAC family protein; SPTR: Q0B0S0 Putative uncharacterized protein; TIGRFAM: germination protein, Ger(x)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
  
     0.741
Slip_0418
Stage III sporulation protein AE; InterPro IPR014194; KEGG: swo:Swol_0554 hypothetical protein; PFAM: Sporulation stage III protein AE; SPTR: Q0AZG6 Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
     0.736
Slip_0100
Stage II sporulation protein R; InterPro IPR014202; KEGG: swo:Swol_0063 pro-sigma-E processing factor spoIIR; PFAM: Sporulation stage II protein R; SPTR: Q0B0T3 Pro-sigma-E processing factor spoIIR; TIGRFAM: stage II sporulation protein R; PFAM: Stage II sporulation protein R (spore_II_R); TIGRFAM: stage II sporulation protein R.
  
     0.731
Slip_0298
InterPro IPR004995; KEGG: swo:Swol_0078 germination protein; PFAM: GerA spore germination protein; SPTR: Q0B0R9 Germination protein; PFAM: Bacillus/Clostridium GerA spore germination protein.
  
     0.728
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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