STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0669Inner-membrane translocator; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: swo:Swol_2112 branched-chain amino acid ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: Q0AV50 Branched-chain amino acid ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component. (291 aa)    
Predicted Functional Partners:
Slip_0670
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: swo:Swol_2111 branched-chain amino acid ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: Q0AV51 Branched-chain amino acid ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component.
 
0.999
Slip_0671
ABC transporter related protein; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR017871:IPR003439; KEGG: swo:Swol_2110 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q0AV52 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
 0.998
Slip_2360
Inner-membrane translocator; COGs: COG4177 ABC-type branched-chain amino acid transport system permease component; InterPro IPR001851; KEGG: swo:Swol_2554 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: Q0ATW3 Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component.
 
0.997
Slip_0668
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: swo:Swol_2113 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative; PFAM: Extracellular ligand-binding receptor; SPTR: Q0AV49 Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein, putative; PFAM: Receptor family ligand binding region.
 
 0.994
Slip_2359
ABC transporter related protein; COGs: COG0411 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439; KEGG: swo:Swol_2553 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q0ATW4 ABC transporter related; PFAM: ABC transporter; Branched-chain amino acid ATP-binding cassette transporter.
 
 0.992
Slip_2358
ABC transporter related protein; COGs: COG0410 ABC-type branched-chain amino acid transport systems ATPase component; InterPro IPR003593:IPR003439:IPR017871; KEGG: swo:Swol_2552 branched-chain amino acid ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q0ATW5 Branched-chain amino acid ABC transporter (ATP-binding protein); PFAM: ABC transporter.
 
 0.991
Slip_2362
Extracellular ligand-binding receptor; COGs: COG0683 ABC-type branched-chain amino acid transport systems periplasmic component; InterPro IPR000709:IPR001828; KEGG: swo:Swol_2556 branched chain amino acid ABC transporter (substrate-binding protein); PFAM: Extracellular ligand-binding receptor; SPTR: Q0ATW1 Branched chain amino acid ABC transporter (Substrate-binding protein); PFAM: Receptor family ligand binding region.
 
 0.990
Slip_2361
Inner-membrane translocator; COGs: COG0559 Branched-chain amino acid ABC-type transport system permease components; InterPro IPR001851; KEGG: swo:Swol_2555 high affinity branched-chain amino acid ABC transporter, permease protein; PFAM: inner-membrane translocator; SPTR: Q0ATW2 High affinity branched-chain amino acid ABC transporter, permease protein; PFAM: Branched-chain amino acid transport system / permease component.
  
  
 
0.903
Slip_0672
InterPro IPR000620; KEGG: swo:Swol_2109 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Q0AV53 Putative uncharacterized protein; PFAM: EamA-like transporter family.
     
 0.786
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.406
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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