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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Slip_0807RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (241 aa)    
Predicted Functional Partners:
Slip_0806
Peptidase U4 sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
 
  
 0.907
Slip_0810
Sporulation protein, YlmC/YmxH family; InterPro IPR011033:IPR007903:IPR014238; KEGG: swo:Swol_0948 hypothetical protein; PFAM: PRC-barrel domain protein; SPTR: Q0AYE1 Putative uncharacterized protein; TIGRFAM: sporulation protein, YlmC/YmxH family; PFAM: PRC-barrel domain; TIGRFAM: sporulation protein, YlmC/YmxH family.
 
     0.866
Slip_0441
Sporulation transcriptional activator Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
   
 0.832
Slip_0109
Transcriptional regulator, AbrB family; COGs: COG2002 Regulators of stationary/sporulation gene expression; InterPro IPR014213:IPR007159:IPR003018:IPR006339; KEGG: hmo:HM1_0719 stage V sporulation protein T, AbrB family transcriptional regulator; PFAM: SpoVT/AbrB domain protein; GAF domain protein; SPTR: B0TBA9 Stage v sporulation protein t, abrb family transcriptional regulator; TIGRFAM: stage V sporulation protein T; transcriptional regulator, AbrB family; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; stage V sporulation protein T.
  
    0.811
Slip_2276
Sporulation transcriptional regulator SpoIIID; InterPro IPR014208:IPR018356; KEGG: swo:Swol_2375 stage III sporulation protein D; SPTR: Q0AUE0 Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID; PFAM: Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID.
  
    0.811
Slip_0100
Stage II sporulation protein R; InterPro IPR014202; KEGG: swo:Swol_0063 pro-sigma-E processing factor spoIIR; PFAM: Sporulation stage II protein R; SPTR: Q0B0T3 Pro-sigma-E processing factor spoIIR; TIGRFAM: stage II sporulation protein R; PFAM: Stage II sporulation protein R (spore_II_R); TIGRFAM: stage II sporulation protein R.
 
     0.789
Slip_1470
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
    0.783
Slip_0528
Stage V sporulation protein AC; InterPro IPR014203:IPR005562; KEGG: drm:Dred_1106 SpoVA protein; PFAM: SpoVA protein; SPTR: A4J3I8 SpoVA protein; TIGRFAM: stage V sporulation protein AC; PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
  
     0.774
Slip_0529
InterPro IPR010894; KEGG: swo:Swol_0627 stage V sporulation protein AD; PFAM: Stage V sporulation AD family protein; SPTR: Q0AZ98 Stage V sporulation AD; TIGRFAM: stage V sporulation protein AD; PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD.
  
     0.774
Slip_0530
Stage V sporulation protein AE; InterPro IPR014204:IPR005562; KEGG: swo:Swol_0628 SpoVA protein; PFAM: SpoVA protein; SPTR: Q0AZ97 SpoVA protein; TIGRFAM: stage V sporulation protein AE; PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AE.
  
     0.774
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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