STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_0899Sporulation integral membrane protein YlbJ; COGs: COG3314 conserved hypothetical protein; InterPro IPR011642:IPR014226; KEGG: swo:Swol_0764 hypothetical protein; PFAM: nucleoside recognition domain protein; SPTR: Q0AYW9 Putative uncharacterized protein; TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: Nucleoside recognition; TIGRFAM: sporulation integral membrane protein YlbJ. (400 aa)    
Predicted Functional Partners:
Slip_1641
Sporulation protein YqfD; InterPro IPR010690; KEGG: swo:Swol_1567 putative stage IV sporulation YqfD; PFAM: putative stage IV sporulation YqfD; SPTR: Q0AWN4 Putative stage IV sporulation YqfD; TIGRFAM: sporulation protein YqfD; PFAM: Putative stage IV sporulation protein YqfD; TIGRFAM: sporulation protein YqfD.
 
   
 0.845
Slip_1642
Sporulation protein YqfC; InterPro IPR009877; KEGG: swo:Swol_1568 hypothetical protein; PFAM: protein of unknown function DUF1429; SPTR: Q0AWN3 Putative uncharacterized protein; TIGRFAM: sporulation protein YqfC; PFAM: YabP family; TIGRFAM: sporulation protein YqfC.
 
   
 0.838
Slip_0100
Stage II sporulation protein R; InterPro IPR014202; KEGG: swo:Swol_0063 pro-sigma-E processing factor spoIIR; PFAM: Sporulation stage II protein R; SPTR: Q0B0T3 Pro-sigma-E processing factor spoIIR; TIGRFAM: stage II sporulation protein R; PFAM: Stage II sporulation protein R (spore_II_R); TIGRFAM: stage II sporulation protein R.
  
   
 0.790
Slip_2276
Sporulation transcriptional regulator SpoIIID; InterPro IPR014208:IPR018356; KEGG: swo:Swol_2375 stage III sporulation protein D; SPTR: Q0AUE0 Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID; PFAM: Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID.
  
  
 0.790
Slip_0806
Peptidase U4 sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.788
Slip_1470
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.783
Slip_0420
KEGG: swo:Swol_0556 hypothetical protein; SPTR: Q0AZG4 Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AG.
  
   
 0.779
Slip_0491
Stage II sporulation protein M; InterPro IPR014196:IPR018062:IPR002798; KEGG: swo:Swol_0605 uncharacterized membrane protein; PFAM: protein of unknown function DUF95 transmembrane; SPTR: Q0AZC0 Uncharacterized membrane protein; TIGRFAM: stage II sporulation protein M; PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
   
 0.779
Slip_0418
Stage III sporulation protein AE; InterPro IPR014194; KEGG: swo:Swol_0554 hypothetical protein; PFAM: Sporulation stage III protein AE; SPTR: Q0AZG6 Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
    0.778
Slip_0414
Stage III sporulation protein AA; COGs: COG3854 conserved hypothetical protein; InterPro IPR014217:IPR003593; KEGG: swo:Swol_0550 stage III sporulation protein spoIIIAA; SMART: AAA ATPase; SPTR: Q0AZH0 Stage III sporulation protein spoIIIAA; TIGRFAM: stage III sporulation protein AA; TIGRFAM: stage III sporulation protein AA.
  
   
 0.776
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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