Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1069degV family protein; COGs: COG1307 conserved hypothetical protein; InterPro IPR003797; KEGG: dhd:Dhaf_2746 DegV family protein; PFAM: DegV family protein; SPTR: B8FWG0 DegV family protein; TIGRFAM: degV family protein; PFAM: Uncharacterised protein, DegV family COG1307; TIGRFAM: EDD domain protein, DegV family. (289 aa)    
Predicted Functional Partners:
Slip_0890
DAK2 domain fusion protein YloV; COGs: COG1461 kinase related to dihydroxyacetone kinase; InterPro IPR004007:IPR019986; KEGG: swo:Swol_0759 hypothetical protein; PFAM: Dak phosphatase; SPTR: Q0AYX3 Putative uncharacterized protein; TIGRFAM: DAK2 domain fusion protein YloV; PFAM: DAK2 domain; TIGRFAM: DAK2 domain fusion protein YloV.
 
 0.991
Slip_1068
Radical SAM domain protein; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR007197:IPR013785; KEGG: swo:Swol_0919 oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q0AYG9 Oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase; PFAM: Radical SAM superfamily.
       0.723
Slip_0889
Protein of unknown function DUF322; COGs: COG1302 conserved hypothetical protein; InterPro IPR005531; KEGG: swo:Swol_0758 hypothetical protein; PFAM: protein of unknown function DUF322; SPTR: Q0AYX4 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF322).
 
    0.700
Slip_1070
COGs: COG1392 Phosphate transport regulator (distant homolog of PhoU); InterPro IPR018445; KEGG: swo:Swol_0920 hypothetical protein; PFAM: Putitive phosphate transport regulator; SPTR: Q0AYG8 Putative uncharacterized protein; PFAM: Protein of unknown function DUF47; TIGRFAM: conserved hypothetical protein TIGR00153.
       0.529
Slip_1067
InterPro IPR018126; KEGG: swo:Swol_0918 hypothetical protein; SPTR: Q0AYH0 Putative uncharacterized protein; PFAM: Small, acid-soluble spore proteins, alpha/beta type.
       0.486
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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