STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1140KEGG: swo:Swol_1380 hypothetical protein; SPTR: Q0AX67 Putative uncharacterized protein. (624 aa)    
Predicted Functional Partners:
Slip_1139
Diguanylate cyclase/phosphodiesterase with GAF sensor; COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterPro IPR003018:IPR000160:IPR001633; KEGG: ava:Ava_4425 diguanylate cyclase/phosphodiesterase with FHA and GAF sensor; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SMART: EAL domain protein; GGDEF domain containing protein; GAF domain protein; SPTR: Q3M4R3 Diguanylate cyclase/phosphodiesterase with FHA and GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate [...]
 
    0.688
Slip_0164
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterProIPR000888:IPR016040:IPR011051:IPR014710:IPR 001509; KEGG: drm:Dred_3032 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: A4J8Y2 NAD-dependent epimerase/dehydratase; PFAM: NAD dependent epimerase/dehydratase family; WxcM-like, C-terminal.
  
  
 0.613
Slip_1441
Hypothetical protein; InterPro IPR008949; KEGG: swo:Swol_0676 hypothetical protein; SPTR: Q0AZ51 Putative uncharacterized protein.
  
   
 0.611
Slip_0762
COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: rmr:Rmar_2613 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: D0MFZ7 Glycosyl transferase group 1; PFAM: Glycosyl transferases group 1; Mannose-6-phosphate isomerase.
 
  
 0.600
Slip_1604
InterPro IPR000305; KEGG: cli:Clim_2264 hypothetical protein; PFAM: Excinuclease ABC C subunit domain protein; SPTR: B3EHC5 Putative uncharacterized protein; PFAM: GIY-YIG catalytic domain.
  
     0.582
Slip_0517
Nucleotidyl transferase; COGs: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); InterProIPR016055:IPR011004:IPR005835:IPR001451:IPR 005844; KEGG: dau:Daud_1040 nucleotidyl transferase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; SPTR: B1I3K9 Nucleotidyl transferase; PFAM: Nucleotidyl transferase; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha [...]
  
  
 0.518
Slip_1386
DnaB domain protein helicase domain protein; COGs: COG0305 Replicative DNA helicase; InterPro IPR007693:IPR007694:IPR016136; KEGG: swo:Swol_1201 replicative DNA helicase-like protein; PFAM: DnaB domain protein helicase domain protein; SPTR: Q0AXP4 Primary replicative DNA helicase; PFAM: DnaB-like helicase N terminal domain; DnaB-like helicase C terminal domain.
  
     0.515
Slip_2116
SEC-C motif domain protein; InterPro IPR004027; KEGG: aac:Aaci_1543 hypothetical protein; PFAM: SEC-C motif domain protein; SPTR: C6J7P4 Putative uncharacterized protein; PFAM: SEC-C motif.
 
   
 0.499
Slip_1506
COGs: COG0463 Glycosyltransferase involved in cell wall biogenesis; InterPro IPR007267:IPR001173:IPR013838; KEGG: swo:Swol_1908 cell wall biosynthesis glycosyltransferase-like protein; PFAM: glycosyl transferase family 2; GtrA family protein; SPTR: Q0AVP9 Glycosyltransferases involved in cell wall biogenesis-like protein; PFAM: GtrA-like protein; Glycosyl transferase family 2.
     
 0.493
Slip_0360
Protein of unknown function DUF1292; InterPro IPR009711; KEGG: swo:Swol_0471 hypothetical protein; PFAM: protein of unknown function DUF1292; SPTR: Q0AZP8 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1292); Belongs to the UPF0473 family.
  
     0.488
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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