STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1192Coenzyme A transferase; COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165; KEGG: oca:OCAR_6775 3-oxoadipate:succinyl-CoA transferase subunit B; PFAM: coenzyme A transferase; SPTR: A8VSU9 ABC transporter related; PFAM: Coenzyme A transferase. (250 aa)    
Predicted Functional Partners:
Slip_1193
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; Contains selenocysteine; InterPro IPR004165; KEGG: xau:Xaut_5072 coenzyme A transferase; PFAM: coenzyme A transferase; SPTR: C8S5T7 Coenzyme A transferase; manually curated; PFAM: Coenzyme A transferase.
 
 0.994
Slip_1196
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165; KEGG: rpa:RPA2318 glutaconate CoA-transferase, subunit A; PFAM: coenzyme A transferase; SPTR: Q6N7E0 Possible glutaconate CoA-transferase, subunit A; PFAM: Coenzyme A transferase.
 
 0.955
Slip_1984
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165; KEGG: dhd:Dhaf_2696 glutaconate CoA-transferase; PFAM: coenzyme A transferase; SPTR: Q24X84 Putative uncharacterized protein; PFAM: Coenzyme A transferase.
 
 0.939
Slip_0098
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165; KEGG: dae:Dtox_1906 coenzyme A transferase; PFAM: coenzyme A transferase; SPTR: C8VXU1 Coenzyme A transferase; PFAM: Coenzyme A transferase.
 
 
 0.934
Slip_0287
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165; KEGG: dae:Dtox_1906 coenzyme A transferase; PFAM: coenzyme A transferase; SPTR: C8VXU1 Coenzyme A transferase; PFAM: Coenzyme A transferase.
 
 0.934
Slip_1240
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165; KEGG: afu:AF1199 glutaconate CoA-transferase, subunit A (GctA); PFAM: coenzyme A transferase; SPTR: O29069 Uncharacterized protein AF_1199; PFAM: Coenzyme A transferase.
 
 0.934
Slip_1983
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165; KEGG: dhd:Dhaf_2696 glutaconate CoA-transferase; PFAM: coenzyme A transferase; SPTR: Q24X84 Putative uncharacterized protein; PFAM: Coenzyme A transferase.
 
 0.934
Slip_1194
Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR016196; KEGG: mmz:MmarC7_0080 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8TFU9 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily.
  
    0.606
Slip_1195
3-oxoadipate CoA-transferase; COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165; KEGG: rpt:Rpal_2560 coenzyme A transferase; PFAM: coenzyme A transferase; PRIAM: 3-oxoadipate CoA-transferase; SPTR: B3QFK0 Coenzyme A transferase; PFAM: Coenzyme A transferase.
 
    
0.553
Slip_1190
PilT protein domain protein; InterPro IPR002716; KEGG: pth:PTH_0364 nucleic acid-binding protein; PFAM: PilT protein domain protein; SPTR: A5D5C6 Predicted nucleic acid-binding protein; PFAM: PIN domain.
       0.419
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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