STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1194Major facilitator superfamily MFS_1; COGs: COG2271 Sugar phosphate permease; InterPro IPR011701:IPR016196; KEGG: mmz:MmarC7_0080 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: A8TFU9 Major facilitator superfamily MFS_1; PFAM: Major Facilitator Superfamily. (439 aa)    
Predicted Functional Partners:
Slip_1193
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; Contains selenocysteine; InterPro IPR004165; KEGG: xau:Xaut_5072 coenzyme A transferase; PFAM: coenzyme A transferase; SPTR: C8S5T7 Coenzyme A transferase; manually curated; PFAM: Coenzyme A transferase.
  
    0.608
Slip_1192
Coenzyme A transferase; COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165; KEGG: oca:OCAR_6775 3-oxoadipate:succinyl-CoA transferase subunit B; PFAM: coenzyme A transferase; SPTR: A8VSU9 ABC transporter related; PFAM: Coenzyme A transferase.
  
    0.606
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
   
 0.566
Slip_1195
3-oxoadipate CoA-transferase; COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165; KEGG: rpt:Rpal_2560 coenzyme A transferase; PFAM: coenzyme A transferase; PRIAM: 3-oxoadipate CoA-transferase; SPTR: B3QFK0 Coenzyme A transferase; PFAM: Coenzyme A transferase.
  
    0.513
Slip_0584
Major facilitator superfamily MFS_1; COGs: COG2223 Nitrate/nitrite transporter; InterPro IPR016196:IPR011701; KEGG: pth:PTH_2422 arabinose efflux permease; PFAM: major facilitator superfamily MFS_1; SPTR: A5CZG9 Arabinose efflux permease; PFAM: Major Facilitator Superfamily.
 
  
 0.499
Slip_0010
COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterProIPR006140:IPR016040:IPR006139:IPR002912:IPR 006236; KEGG: swo:Swol_0009 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; PRIAM: Phosphoglycerate dehydrogenase; SPTR: Q0B0Y6 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific [...]
  
  
 0.452
Slip_1196
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165; KEGG: rpa:RPA2318 glutaconate CoA-transferase, subunit A; PFAM: coenzyme A transferase; SPTR: Q6N7E0 Possible glutaconate CoA-transferase, subunit A; PFAM: Coenzyme A transferase.
  
    0.452
Slip_0800
Heavy metal translocating P-type ATPase; COGs: COG2217 Cation transport ATPase; InterProIPR006121:IPR018303:IPR017969:IPR001366:IPR 001757:IPR008250:IPR005834:IPR006404:IPR006416; KEGG: swo:Swol_2086 cadmium-transporting ATPase; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; SPTR: Q0AV76 Cadmium-transporting ATPase; TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase; Heavy-metal- [...]
       0.406
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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