STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1226KEGG: swo:Swol_1131 hypothetical protein; SPTR: Q0AXW3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3343). (95 aa)    
Predicted Functional Partners:
Slip_1227
Thioesterase superfamily protein; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683:IPR003736; KEGG: swo:Swol_1130 uncharacterized aromatic compound catabolism protein; PFAM: thioesterase superfamily protein; SPTR: Q0AXW4 Uncharacterized aromatic compound catabolism protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.
       0.731
Slip_1501
Sporulation protein YtxC; InterPro IPR014199; KEGG: swo:Swol_1087 hypothetical protein; PFAM: Sporulation protein YtxC; SPTR: Q0AY07 Putative uncharacterized protein; PFAM: YtxC-like family; TIGRFAM: putative sporulation protein YtxC.
  
     0.685
Slip_0276
Cysteine desulfurase family protein; COGs: COG0520 Selenocysteine lyase; InterProIPR020578:IPR015424:IPR015421:IPR000192:IPR 010969; KEGG: swo:Swol_1912 selenocysteine lyase; PFAM: aminotransferase class V; SPTR: Q0AVP5 Selenocysteine lyase; TIGRFAM: cysteine desulfurase family protein; PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein.
 
   
 0.673
Slip_0277
Selenium metabolism protein YedF; InterPro IPR001455:IPR019870; KEGG: swo:Swol_1887 SirA-like protein; PFAM: SirA family protein; SPTR: Q0AVR9 SirA-like protein; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA-like protein; DsrE/DsrF-like family; TIGRFAM: selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
   
 0.627
Slip_0959
InterPro IPR001635; KEGG: swo:Swol_0855 flagellar hook-length control protein-like protein; PFAM: flagellar hook-length control protein; SPTR: Q0AYN1 Flagellar hook-length control protein-like protein; PFAM: Flagellar hook-length control protein FliK.
  
     0.526
Slip_0033
KEGG: swo:Swol_2089 hypothetical protein; SPTR: Q0AV73 Putative uncharacterized protein.
 
     0.497
Slip_2290
KEGG: swo:Swol_2389 hypothetical protein; SPTR: Q0AUC6 Putative uncharacterized protein.
  
     0.488
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.