STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1501Sporulation protein YtxC; InterPro IPR014199; KEGG: swo:Swol_1087 hypothetical protein; PFAM: Sporulation protein YtxC; SPTR: Q0AY07 Putative uncharacterized protein; PFAM: YtxC-like family; TIGRFAM: putative sporulation protein YtxC. (307 aa)    
Predicted Functional Partners:
Slip_2368
Conserved hypothetical protein; COGs: COG3949 Uncharacterized membrane protein; KEGG: swo:Swol_2562 hypothetical protein; SPTR: Q0ATV5 Putative uncharacterized protein; manually curated.
 
     0.726
Slip_1658
KEGG: mta:Moth_0580 hypothetical protein; SPTR: Q2RKX9 Putative uncharacterized protein; PFAM: Membrane protein of unknown function.
  
    0.715
Slip_1226
KEGG: swo:Swol_1131 hypothetical protein; SPTR: Q0AXW3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3343).
  
     0.685
Slip_0692
Rod shape-determining protein MreD; InterPro IPR017225:IPR007227; KEGG: swo:Swol_1639 hypothetical protein; SPTR: Q0AWG6 Putative uncharacterized protein; TIGRFAM: rod shape-determining protein MreD; PFAM: rod shape-determining protein MreD; TIGRFAM: rod shape-determining protein MreD.
  
     0.676
Slip_2265
KEGG: swo:Swol_2364 hypothetical protein; SPTR: Q0AUF1 Putative uncharacterized protein.
  
     0.666
Slip_0418
Stage III sporulation protein AE; InterPro IPR014194; KEGG: swo:Swol_0554 hypothetical protein; PFAM: Sporulation stage III protein AE; SPTR: Q0AZG6 Putative uncharacterized protein; TIGRFAM: stage III sporulation protein AE; PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
     0.654
Slip_0959
InterPro IPR001635; KEGG: swo:Swol_0855 flagellar hook-length control protein-like protein; PFAM: flagellar hook-length control protein; SPTR: Q0AYN1 Flagellar hook-length control protein-like protein; PFAM: Flagellar hook-length control protein FliK.
  
     0.632
Slip_1102
Protein of unknown function DUF2225; COGs: COG1655 conserved hypothetical protein; InterPro IPR018708; KEGG: ctc:CTC00335 hypothetical protein; PFAM: Protein of unknown function DUF2225; SPTR: C6Q1Q4 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2225).
  
     0.612
Slip_0491
Stage II sporulation protein M; InterPro IPR014196:IPR018062:IPR002798; KEGG: swo:Swol_0605 uncharacterized membrane protein; PFAM: protein of unknown function DUF95 transmembrane; SPTR: Q0AZC0 Uncharacterized membrane protein; TIGRFAM: stage II sporulation protein M; PFAM: Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
     0.611
Slip_0832
KEGG: swo:Swol_0963 hypothetical protein; SPTR: Q0AYC6 Putative uncharacterized protein.
  
     0.603
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.