STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1531COGs: COG3552 Protein containing von Willebrand factor type A (vWA) domain; InterPro IPR008912; KEGG: pth:PTH_0548 hypothetical protein; PFAM: VWA containing CoxE family protein; SPTR: A5D4U2 Putative uncharacterized protein CoxE; PFAM: VWA domain containing CoxE-like protein. (324 aa)    
Predicted Functional Partners:
Slip_1530
ATPase associated with various cellular activities AAA_5; COGs: COG0714 MoxR-like ATPase; InterPro IPR011704:IPR003593; KEGG: mta:Moth_0825 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; SPTR: Q2RK97 ATPase associated with various cellular activities, AAA_5; PFAM: AAA domain (dynein-related subfamily).
 
     0.950
Slip_0019
ATPase associated with various cellular activities AAA_5; COGs: COG0714 MoxR-like ATPase; InterPro IPR011704; KEGG: nca:Noca_0291 ATPase; PFAM: ATPase associated with various cellular activities AAA_5; SPTR: A1SDF1 ATPase associated with various cellular activities, AAA_5; PFAM: ATPase family associated with various cellular activities (AAA).
 
     0.789
Slip_1527
ABC transporter related protein; COGs: COG1136 ABC-type antimicrobial peptide transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: rfr:Rfer_1942 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Q21X35 ABC transporter related; PFAM: ABC transporter.
       0.447
Slip_1528
Protein of unknown function DUF214; COGs: COG4591 ABC-type transport system involved in lipoprotein release permease component; InterPro IPR003838; KEGG: dau:Daud_1146 hypothetical protein; PFAM: protein of unknown function DUF214; SPTR: B1I442 Putative uncharacterized protein; PFAM: Predicted permease.
       0.447
Slip_1529
Efflux transporter, RND family, MFP subunit; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: dhd:Dhaf_1550 efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; SPTR: B8FP75 Efflux transporter, RND family, MFP subunit; TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: HlyD family secretion protein; TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.447
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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