STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1617COGs: COG1787 endonuclease distantly related to Holliday junction resolvase and Mrr-like restriction enzyme; InterPro IPR007560:IPR011335; KEGG: chy:CHY_1700 putative prophage LambdaCh01, restriction endonuclease; PFAM: restriction endonuclease; SPTR: Q3ABG4 Putative prophage LambdaCh01, restriction endonuclease; PFAM: Restriction endonuclease. (230 aa)    
Predicted Functional Partners:
Slip_1616
KEGG: pca:Pcar_2926 Zn-ribbon protein; SPTR: C7IFQ3 Putative uncharacterized protein.
       0.464
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.