STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1727COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006; KEGG: swo:Swol_1456 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q0AWZ1 Response regulator receiver protein; PFAM: Response regulator receiver domain. (124 aa)    
Predicted Functional Partners:
Slip_1728
CheA signal transduction histidine kinase; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR005467:IPR002545:IPR008207:IPR004358:IPR 004105:IPR003594:IPR009082; KEGG: swo:Swol_1455 putative CheA signal transduction histidine kinases; PFAM: ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; CheW domain protein; SMART: ATP-binding region ATPase domain protein; Hpt domain protein; CheW domain protein; SPTR: Q0AWZ2 CheA signal transduction histidine kinase; PFAM: CheW-like domain; Histidine kinase-, [...]
 0.990
Slip_0978
CheA signal transduction histidine kinase; COGs: COG0643 Chemotaxis protein histidine kinase and related kinase; InterProIPR008207:IPR003594:IPR002545:IPR010808:IPR 004105:IPR004358:IPR009082:IPR005467; KEGG: swo:Swol_0874 putative CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; P2 response regulator binding domain protein; Hpt domain protein; SMART: CheW domain protein; Hpt domain protein; ATP-binding region ATPase domain protein; SPTR: Q0AYL2 Putative CheA signal transduc [...]
 0.988
Slip_1735
COGs: COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; InterPro IPR001789:IPR011006; KEGG: swo:Swol_1448 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q0AWZ9 Response regulator receiver protein; PFAM: Response regulator receiver domain.
 
  
 0.983
Slip_0967
COGs: COG2204 Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains; InterPro IPR001789:IPR011006; KEGG: swo:Swol_0863 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: Q0AYM3 Response regulator receiver protein; PFAM: Response regulator receiver domain.
 
 0.957
Slip_1736
Chemotaxis operon protein; COGs: COG1406 inhibitor of MCP methylation homolog of CheC; KEGG: swo:Swol_1447 chemotaxis operon protein; SPTR: Q0AX00 Chemotaxis operon protein.
  
 
  0.930
Slip_1737
CheC domain protein; COGs: COG1406 inhibitor of MCP methylation homolog of CheC; InterPro IPR007597; KEGG: swo:Swol_1446 CheX protein (uncharacterized ORF in chemotaxis operon); PFAM: CheC domain protein; SPTR: Q0AX01 CheX protein (Uncharacterized ORF in chemotaxis operon); PFAM: CheC-like family.
  
 
  0.928
Slip_0966
COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; InterPro IPR007597:IPR001543:IPR001172:IPR012826; KEGG: swo:Swol_0862 CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; SPTR: Q0AYM4 CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); CheC-like family; TIGRFAM: flagellar motor switch protein FliN.
  
 0.925
Slip_1733
CheW protein; COGs: COG0835 Chemotaxis signal transduction protein; InterPro IPR002545; KEGG: swo:Swol_1450 chemotaxis signal transduction protein; PFAM: CheW domain protein; SMART: CheW domain protein; SPTR: Q0AWZ7 CheW protein; PFAM: CheW-like domain.
 
 
 0.906
Slip_0980
COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; InterPro IPR007597; KEGG: swo:Swol_0876 CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; SPTR: Q0AYL0 CheC, inhibitor of MCP methylation; PFAM: CheC-like family.
     
 0.904
Slip_1732
COGs: COG0840 Methyl-accepting chemotaxis protein; InterPro IPR004089; KEGG: swo:Swol_1451 putative methyl-accepting chemotaxis sensory transducer; PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; SPTR: Q0AWZ6 Putative methyl-accepting chemotaxis sensory transducer; PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain.
 
 0.897
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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