STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1968Protein of unknown function UPF0150; InterPro IPR005357; KEGG: pth:PTH_0968 hypothetical protein; PFAM: protein of unknown function UPF0150; SPTR: A5D3P4 Uncharacterized conserved protein; PFAM: Uncharacterised protein family (UPF0150). (137 aa)    
Predicted Functional Partners:
Slip_1550
YcfA family protein; COGs: COG1724 periplasmic or secreted lipoprotein; InterPro IPR012933; KEGG: mta:Moth_0250 YcfA-like; PFAM: YcfA family protein; SPTR: Q2RLV4 YcfA-like; PFAM: YcfA-like protein.
   
 
 0.782
Slip_1839
YcfA family protein; COGs: COG1724 periplasmic or secreted lipoprotein; InterPro IPR012933; KEGG: mta:Moth_0484 YcfA-like; PFAM: YcfA family protein; SPTR: Q2RL75 YcfA-like; PFAM: YcfA-like protein.
   
 
 0.730
Slip_1996
Protein of unknown function UPF0150; COGs: COG1598 conserved hypothetical protein; InterPro IPR005357; KEGG: pth:PTH_2206 hypothetical protein; PFAM: protein of unknown function UPF0150; SPTR: A5D043 Uncharacterized conserved protein; PFAM: Uncharacterised protein family (UPF0150).
  
     0.554
Slip_1541
YcfA family protein; COGs: COG1724 periplasmic or secreted lipoprotein; InterPro IPR012933; KEGG: cyt:cce_3064 hypothetical protein; PFAM: YcfA family protein; SPTR: B0BGF1 Putative integron gene cassette protein; manually curated; PFAM: YcfA-like protein.
   
 
 0.541
Slip_0183
InterPro IPR002716; KEGG: chy:CHY_1722 PilT domain-containing protein; PFAM: PilT protein domain protein; SPTR: Q3ABE2 PIN domain protein; PFAM: PIN domain.
  
     0.471
Slip_1279
COGs: COG2405 nucleic acid-binding protein contains PIN domain; KEGG: pth:PTH_0694 nucleic acid-binding protein; SPTR: A5D4E4 Predicted nucleic acid-binding protein; PFAM: Domain of unknown function (DUF3368).
  
     0.412
Slip_1967
KEGG: mta:Moth_2363 putative transmembrane transcriptional regulator (anti-sigma factor); SPTR: Q2RFZ4 Putative transmembrane transcriptional regulator (Anti-sigma factor); PFAM: Anti-sigma-K factor rskA.
       0.402
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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