STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1981L-carnitine dehydratase/bile acid-inducible protein F; COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: sfu:Sfum_1527 alpha-methylacyl-CoA racemase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: A0LIG3 Alpha-methylacyl-CoA racemase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family. (394 aa)    
Predicted Functional Partners:
Slip_1982
Glutaconate CoA-transferase; COGs: COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase beta subunit; InterPro IPR004165; KEGG: sfu:Sfum_0809 glutaconate CoA-transferase; PFAM: coenzyme A transferase; PRIAM: Glutaconate CoA-transferase; SPTR: A0LGF5 Glutaconate CoA-transferase; PFAM: Coenzyme A transferase.
     
 0.611
Slip_1983
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165; KEGG: dhd:Dhaf_2696 glutaconate CoA-transferase; PFAM: coenzyme A transferase; SPTR: Q24X84 Putative uncharacterized protein; PFAM: Coenzyme A transferase.
       0.594
Slip_1984
Coenzyme A transferase; COGs: COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase alpha subunit; InterPro IPR004165; KEGG: dhd:Dhaf_2696 glutaconate CoA-transferase; PFAM: coenzyme A transferase; SPTR: Q24X84 Putative uncharacterized protein; PFAM: Coenzyme A transferase.
       0.568
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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