Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slip_1997Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR009057:IPR012287:IPR001647; KEGG: swo:Swol_0026 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q0B0W9 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family. (223 aa)    
Predicted Functional Partners:
Slip_1998
Thioesterase superfamily protein; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR003736:IPR006683; KEGG: swo:Swol_0025 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: Q0B0X0 Uncharacterized aromatic compound catabolism-like protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.
     
 0.614
Slip_0873
Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: swo:Swol_0269 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Q0B087 Transcriptional regulator, MarR family; PFAM: MarR family.
  
   
 0.522
Slip_0454
Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: swo:Swol_2127 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: Q0AV36 Transcriptional regulator, MarR family; PFAM: MarR family.
  
   
 0.500
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.440
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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