STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_1998Thioesterase superfamily protein; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR003736:IPR006683; KEGG: swo:Swol_0025 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: Q0B0X0 Uncharacterized aromatic compound catabolism-like protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1. (162 aa)    
Predicted Functional Partners:
Slip_0471
Thioesterase superfamily protein; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR003736:IPR006683; KEGG: tex:Teth514_1169 thioesterase superfamily protein; PFAM: thioesterase superfamily protein; SPTR: C6PBL6 Thioesterase superfamily protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.
  
     0.771
Slip_1997
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR009057:IPR012287:IPR001647; KEGG: swo:Swol_0026 TetR family transcriptional regulator; PFAM: regulatory protein TetR; SPTR: Q0B0W9 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
       0.603
plsX
Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.417
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.