Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Slip_2000Protein of unknown function DUF342; COGs: COG1315 polymerase most protein contain PALM domain HD hydrolase domain and Zn-ribbon domain; InterPro IPR005646; KEGG: mta:Moth_0823 hypothetical protein; PFAM: protein of unknown function DUF342; SPTR: Q2RK99 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF342). (669 aa)    
Predicted Functional Partners:
Slip_0908
Conserved hypothetical protein; COGs: COG1837 RNA-binding protein (contains KH domain); InterPro IPR009019:IPR004088; KEGG: ckr:CKR_1299 hypothetical protein; SPTR: B9E1H5 Putative uncharacterized protein; Belongs to the UPF0109 family.
   
 
 0.798
Slip_1999
Hypothetical protein.
       0.773
Slip_0965
COGs: COG1868 Flagellar motor switch protein; InterPro IPR001689:IPR001543; KEGG: swo:Swol_0861 hypothetical protein; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; SPTR: Q0AYM5 Putative uncharacterized protein; TIGRFAM: flagellar motor switch protein FliM; PFAM: Surface presentation of antigens (SPOA); Flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM.
 
 
   0.683
Slip_0974
COGs: COG1419 Flagellar GTP-binding protein; InterPro IPR003593:IPR000897:IPR020006; KEGG: swo:Swol_0870 hypothetical protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; SPTR: Q0AYL6 Putative uncharacterized protein; TIGRFAM: flagellar biosynthetic protein FlhF; PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF.
 
   
 0.670
Slip_2382
Membrane protein insertase, YidC/Oxa1 family; COGs: COG0706 Preprotein translocase subunit YidC; InterPro IPR001708:IPR013308:IPR020001; KEGG: pth:PTH_2919 preprotein translocase subunit YidC; PFAM: 60 kDa inner membrane insertion protein; SPTR: A5CY48 Preprotein translocase subunit YidC; TIGRFAM: membrane protein insertase, YidC/Oxa1 family; PFAM: 60Kd inner membrane protein; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain.
  
  
 0.636
Slip_0966
COGs: COG1776 Chemotaxis protein CheC inhibitor of MCP methylation; InterPro IPR007597:IPR001543:IPR001172:IPR012826; KEGG: swo:Swol_0862 CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; SPTR: Q0AYM4 CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); CheC-like family; TIGRFAM: flagellar motor switch protein FliN.
 
     0.620
Slip_0704
Ribonuclease, Rne/Rng family; COGs: COG1530 Ribonuclease G and E; InterPro IPR016027:IPR012340:IPR019307:IPR004659; KEGG: swo:Swol_1614 ribonuclease E and G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; SPTR: Q0AWI9 RNAse G; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: Ribonuclease E/G family; TIGRFAM: ribonuclease, Rne/Rng family.
   
 
 0.618
Slip_2272
Conserved hypothetical protein; COGs: COG0849 Actin-like ATPase involved in cell division; KEGG: swo:Swol_2371 hypothetical protein; SPTR: Q0AUE4 Putative uncharacterized protein; PFAM: Cell division protein FtsA; TIGRFAM: cell division protein FtsA.
 
   
 0.608
Slip_1737
CheC domain protein; COGs: COG1406 inhibitor of MCP methylation homolog of CheC; InterPro IPR007597; KEGG: swo:Swol_1446 CheX protein (uncharacterized ORF in chemotaxis operon); PFAM: CheC domain protein; SPTR: Q0AX01 CheX protein (Uncharacterized ORF in chemotaxis operon); PFAM: CheC-like family.
  
     0.583
fliW
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
     0.577
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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