Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Slip_2012Protein of unknown function DUF2442; InterPro IPR018841; KEGG: mta:Moth_0363 molybdopterin-guanine dinucleotide biosynthesis protein A-like; PFAM: Protein of unknown function DUF2442; SPTR: Q2RLJ2 Molybdopterin-guanine dinucleotide biosynthesis protein A-like; PFAM: Protein of unknown function (DUF2442). (97 aa)    
Predicted Functional Partners:
Slip_2013
KEGG: mta:Moth_0362 hypothetical protein; SPTR: Q2RLJ3 Putative uncharacterized protein.
 
     0.951
Slip_1601
COGs: COG1569 nucleic acid-binding protein contains PIN domain; InterPro IPR002850; KEGG: dol:Dole_0924 nucleic acid binding protein; SPTR: A8ZWC6 Nucleic acid-binding protein contains PIN domain-like protein; TIGRFAM: conserved hypothetical protein TIGR00305.
  
     0.647
Slip_1688
KEGG: pth:PTH_1988 hypothetical protein; SPTR: A5D0R3 Putative uncharacterized protein.
  
     0.592
Slip_2030
KEGG: adg:Adeg_1368 hypothetical protein; SPTR: C9R841 Putative uncharacterized protein.
 
   
 0.588
Slip_1888
KEGG: mta:Moth_2318 hypothetical protein; SPTR: Q2RG34 Putative uncharacterized protein.
  
     0.584
Slip_1307
COGs: COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain; InterPro IPR011006:IPR001789:IPR000160; KEGG: adg:Adeg_1202 response regulator receiver protein; PFAM: response regulator receiver; GGDEF domain containing protein; SMART: response regulator receiver; SPTR: C9R7N4 Response regulator receiver protein; PFAM: Response regulator receiver domain.
  
   
 0.571
Slip_2041
DnaB domain protein helicase domain protein; COGs: COG0358 DNA primase; InterProIPR002694:IPR006154:IPR007694:IPR013264:IPR 006171; KEGG: sal:Sala_0980 DNA primase; PFAM: DnaB domain protein helicase domain protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; SPTR: A3YYA9 DNA primase; PFAM: Toprim domain; CHC2 zinc finger; DnaB-like helicase C terminal domain; TIGRFAM: DNA primase, catalytic core.
 
    0.563
vapC-2
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.562
Slip_2011
Domain of unknown function DUF1738; COGs: COG4227 Antirestriction protein; InterPro IPR017113:IPR013610; KEGG: dae:Dtox_2455 domain of unknown function DUF1738; PFAM: domain of unknown function DUF1738; SPTR: C3CUG2 Putative uncharacterized protein; PFAM: Domain of unknown function (DUF1738).
       0.495
Slip_0013
COGs: COG2402 nucleic acid-binding protein contains PIN domain; KEGG: pth:PTH_2698 nucleic acid-binding protein; SPTR: A5CYP5 Predicted nucleic acid-binding protein; PFAM: PIN domain.
  
     0.448
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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