Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Slip_2016KEGG: rme:Rmet_1296 HupE/UreJ protein; SPTR: Q1LNU5 HupE/UreJ protein. (100 aa)    
Predicted Functional Partners:
Slip_2014
Hypothetical protein; KEGG: mmy:MSC_0984 UDP-galactopyranose mutase; SPTR: A3IAL0 Putative uncharacterized protein.
       0.515
Slip_2015
KEGG: pth:PTH_2465 hypothetical protein; SPTR: A5CZF0 Putative uncharacterized protein.
       0.515
Slip_2017
KEGG: hypothetical protein; SPTR: Q5B8L5 Putative uncharacterized protein.
       0.472
Slip_2018
KEGG: pth:PTH_2473 hypothetical protein; SPTR: A5CZC3 Putative uncharacterized protein.
       0.440
Slip_2019
COGs: COG0539 Ribosomal protein S1; InterPro IPR016027:IPR003029; KEGG: pth:PTH_2479 RNA-binding protein; SPTR: A5CZC9 Hypothetical RNA-binding protein.
       0.440
Slip_2020
KEGG: hypothetical protein; SPTR: A2R2N8 Contig An14c0060, complete genome.
       0.440
Slip_2021
AAA ATPase central domain protein; COGs: COG0464 ATPase of the AAA+ class; InterPro IPR003593:IPR000641:IPR003959; KEGG: pth:PTH_2484 hypothetical protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: A5CZD4 Putative uncharacterized protein; PFAM: ATPase family associated with various cellular activities (AAA).
       0.440
Slip_2022
KEGG: hypothetical protein; K07752 carboxypeptidase D; SPTR: C3YY10 Putative uncharacterized protein.
       0.440
Slip_2023
InterPro IPR007404; KEGG: drm:Dred_0844 membrane-bound metal-dependent hydrolase; PFAM: membrane-bound metal-dependent hydrolase; SPTR: A4J2S9 Membrane-bound metal-dependent hydrolase; PFAM: Predicted membrane-bound metal-dependent hydrolase (DUF457).
       0.425
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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