STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_2038Hypothetical protein. (33 aa)    
Predicted Functional Partners:
Slip_2039
KEGG: hypothetical protein.
       0.773
Slip_2040
KEGG: ade:Adeh_0774 heat shock protein DnaJ-like; SPTR: Q2IP21 Heat shock protein DnaJ-like.
       0.773
Slip_2041
DnaB domain protein helicase domain protein; COGs: COG0358 DNA primase; InterProIPR002694:IPR006154:IPR007694:IPR013264:IPR 006171; KEGG: sal:Sala_0980 DNA primase; PFAM: DnaB domain protein helicase domain protein; TOPRIM domain protein; DNA primase catalytic core domain; SMART: Toprim sub domain protein; SPTR: A3YYA9 DNA primase; PFAM: Toprim domain; CHC2 zinc finger; DnaB-like helicase C terminal domain; TIGRFAM: DNA primase, catalytic core.
       0.773
Slip_2037
COGs: COG0776 Bacterial nucleoid DNA-binding protein; InterPro IPR010992:IPR000119; KEGG: lsl:LSL_1774 DNA-binding protein HU; PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; SPTR: Q1WRB9 DNA-binding protein HU; PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family.
       0.642
Slip_2036
KEGG: rfr:Rfer_2305 hypothetical protein; SPTR: Q21W30 Conserved hypothetical transmembrane protein.
       0.456
Slip_2042
KEGG: adg:Adeg_1374 hypothetical protein; SPTR: C9R847 Putative uncharacterized protein.
       0.444
Slip_2043
Hypothetical protein; KEGG: sma:SAV_4526 tryptophan 2,3-dioxygenase; SPTR: Q82ET7 Putative tryptophan 2,3-dioxygenase.
       0.424
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.