STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_2128COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR011322:IPR015867:IPR017918:IPR002187; KEGG: cts:Ctha_1830 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: B3QTT9 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. (121 aa)    
Predicted Functional Partners:
Slip_2126
Nitrogenase; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000318:IPR000510; KEGG: dau:Daud_0147 nitrogenase; PFAM: oxidoreductase/nitrogenase component 1; PRIAM: Nitrogenase; SPTR: B1I0Z2 Nitrogenase; PFAM: Nitrogenase component 1 type Oxidoreductase.
 
 
 0.944
Slip_2127
COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR005974:IPR010143:IPR000318:IPR000510; KEGG: mta:Moth_0551 nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase component 1; SPTR: Q2RL08 Nitrogenase protein alpha chain; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase alpha chain; PFAM: Nitrogenase component 1 type Oxidoreductase; TIGRFAM: nitrogenase component I, alpha chain; nitrogenase alpha chain.
 
 
 0.923
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
  
 0.921
Slip_2125
Oxidoreductase/nitrogenase component 1; COGs: COG2710 Nitrogenase molybdenum-iron protein alpha and beta chains; InterPro IPR000318:IPR000510; KEGG: dau:Daud_0148 nitrogenase; PFAM: oxidoreductase/nitrogenase component 1; SPTR: B1I0Z3 Nitrogenase; PFAM: Nitrogenase component 1 type Oxidoreductase; Belongs to the NifD/NifK/NifE/NifN family.
 
 
 0.890
Slip_2119
Ammonium transporter; COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047:IPR002229; KEGG: afu:AF1746 ammonium transporter (amt-2); PFAM: ammonium transporter; SPTR: O28528 Ammonium transporter (Amt-2); TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter.
 
 
 0.854
Slip_2124
Radical SAM domain protein; COGs: COG0535 Fe-S oxidoreductase; InterPro IPR000385:IPR006638:IPR007197; KEGG: glo:Glov_0422 radical SAM domain protein; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: B3E297 Radical SAM domain protein; PFAM: Radical SAM superfamily; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB.
  
  
 0.840
Slip_2129
COGs: COG0347 Nitrogen regulatory protein PII; InterPro IPR011322:IPR015867:IPR017918:IPR002187; KEGG: mvn:Mevan_0064 nitrogen regulatory protein P-II; PFAM: nitrogen regulatory protein P-II; SPTR: A6UNA6 Nitrogen regulatory protein P-II; PFAM: Nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
 
   
0.840
Slip_1571
Ammonium transporter; COGs: COG0004 Ammonia permease; InterPro IPR001905:IPR018047; KEGG: dae:Dtox_1019 ammonium transporter; PFAM: ammonium transporter; SPTR: C8W3D8 Ammonium transporter; TIGRFAM: ammonium transporter; PFAM: Ammonium Transporter Family; TIGRFAM: ammonium transporter.
  
 
 0.827
argB
Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
    
 
 0.763
Slip_0344
KEGG: pth:PTH_0757 hypothetical protein; SPTR: A5D497 Hypothetical membrane protein.
    
 
 0.761
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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