STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_2189Arsenical-resistance protein; COGs: COG0798 Arsenite efflux pump ACR3 and related permease; InterPro IPR004706:IPR002657; KEGG: bcq:BCQ_3008 arsenical-resistance protein; PFAM: Bile acid:sodium symporter; SPTR: C3H311 Arsenite resistance protein arsB; TIGRFAM: arsenical-resistance protein; PFAM: Sodium Bile acid symporter family; TIGRFAM: arsenical-resistance protein. (354 aa)    
Predicted Functional Partners:
Slip_0798
Protein-tyrosine phosphatase, low molecular weight; COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867; KEGG: dth:DICTH_0400 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: B5YCM4 Arsenate reductase; PFAM: Low molecular weight phosphotyrosine protein phosphatase; TIGRFAM: arsenate reductase (thioredoxin).
 
  
 0.953
Slip_2192
Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: amt:Amet_2013 regulatory protein, ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: A6TPQ8 Regulatory protein, ArsR; PFAM: Bacterial regulatory protein, arsR family.
  
  
 0.703
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.700
Slip_2185
OsmC family protein; InterPro IPR003718:IPR015946; KEGG: ote:Oter_1310 OsmC family protein; PFAM: OsmC family protein; SPTR: A6EMY0 OsmC-like protein; PFAM: OsmC-like protein.
     
 0.690
Slip_2186
DGC domain protein; InterPro IPR014958; KEGG: mta:Moth_2216 hypothetical protein; PFAM: DGC domain protein; SPTR: C0CIG2 Putative uncharacterized protein; PFAM: DGC domain.
       0.677
Slip_2187
DGC domain protein; InterPro IPR014958; KEGG: mta:Moth_2217 hypothetical protein; PFAM: DGC domain protein; SPTR: Q2RGD3 Putative uncharacterized protein; PFAM: DGC domain.
       0.677
Slip_2184
COGs: COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (E3); InterProIPR016156:IPR013027:IPR000815:IPR006258:IPR 004099:IPR012999; KEGG: chy:CHY_0713 alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SPTR: Q3AE67 Dihydrolipoyl dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisatio [...]
     
 0.668
Slip_2190
KEGG: mta:Moth_2215 hypothetical protein; SPTR: Q2RGD5 Putative uncharacterized protein.
       0.608
Slip_2295
COGs: COG0394 Protein-tyrosine-phosphatase; InterPro IPR017867:IPR000106; KEGG: adg:Adeg_0069 protein tyrosine phosphatase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; SPTR: C9RAD6 Protein tyrosine phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase.
  
  
 0.529
Slip_2195
Permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: nth:Nther_0966 permease; PFAM: permease; SPTR: B2A0I9 Permease; PFAM: Predicted permease.
  
  
 0.453
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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