STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Slip_2194KEGG: nth:Nther_0965 hypothetical protein; SPTR: B2A0I8 Putative uncharacterized protein. (62 aa)    
Predicted Functional Partners:
Slip_2193
Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR011991:IPR005149; KEGG: mta:Moth_2223 PadR family transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: Q2RGC9 Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family.
       0.576
Slip_2195
Permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: nth:Nther_0966 permease; PFAM: permease; SPTR: B2A0I9 Permease; PFAM: Predicted permease.
       0.506
Your Current Organism:
Syntrophothermus lipocalidus
NCBI taxonomy Id: 643648
Other names: S. lipocalidus DSM 12680, Syntrophothermus lipocalidus DSM 12680, Syntrophothermus lipocalidus TGB-C1, Syntrophothermus lipocalidus str. DSM 12680, Syntrophothermus lipocalidus strain DSM 12680
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