STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20024.1Hypothetical protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family. (249 aa)    
Predicted Functional Partners:
ADR20025.1
Holliday junction resolvase YqgF; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.784
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.782
ADR22684.1
KEGG: fjo:Fjoh_2415 hypothetical protein; SPTR: Putative uncharacterized protein.
 
    0.725
ADR22869.1
CRISPR-associated protein Cas6; COGs: COG1583 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR002743: IPR010156; KEGG: chu:CHU_2218 hypothetical protein; PFAM: protein of unknown function DUF57; SPTR: Putative uncharacterized protein; TIGRFAM: CRISPR-associated protein Cas6; PFAM: CRISPR associated protein Cas6; TIGRFAM: CRISPR-associated endoribonuclease Cas6.
  
     0.618
ADR22691.1
KEGG: dfe:Dfer_0697 nitrous-oxide metabolic protein NosY; SPTR: Nitrous-oxide metabolic protein NosY.
 
     0.582
ADR22688.1
KEGG: hth:HTH_0161 nitrous oxide reductase accessory protein; SPTR: Nitrous oxide reductase accessory protein; PFAM: NosL.
 
     0.574
ADR22685.1
Cytochrome c class I; InterPro IPR009056: IPR003088; KEGG: dfe:Dfer_0692 cytochrome c class I; PFAM: cytochrome c class I; SPTR: Cytochrome c class I; PFAM: Cytochrome c.
  
    0.571
ADR22706.1
KEGG: gfo:GFO_1402 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
 
     0.566
ADR22686.1
COGs: COG4263 Nitrous oxide reductase; InterPro IPR002429: IPR001505; KEGG: rbi:RB2501_05465 nitrous oxide reductase precursor; PFAM: cytochrome c oxidase subunit II; PRIAM: Nitrous-oxide reductase; SPTR: Nitrous-oxide reductase; PFAM: Cytochrome C oxidase subunit II, periplasmic domain.
 
    0.554
ADR22707.1
Transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: rbi:RB2501_10797 rrf2 family protein (putative transcriptional regulator); PFAM: protein of unknown function UPF0074; SPTR: Rrf2 family protein (Putative transcriptional regulator); TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator).
 
  
 0.531
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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