STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20074.1Hypothetical protein; COGs: COG5496 thioesterase; KEGG: aac:Aaci_0813 hypothetical protein; SPTR: Putative uncharacterized protein. (131 aa)    
Predicted Functional Partners:
tsaD
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
       0.782
ADR20532.1
Phenylacetic acid degradation protein paaN; COGs: COG1012 NAD-dependent aldehyde dehydrogenase; InterPro IPR011975: IPR015590; KEGG: cpi:Cpin_1136 phenylacetic acid degradation protein PaaN; PFAM: Aldehyde Dehydrogenase; SPTR: Phenylacetic acid degradation protein paaN; TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: Aldehyde dehydrogenase family; TIGRFAM: phenylacetic acid degradation protein paaN.
 
     0.739
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.693
ADR20277.1
phenylacetate-CoA oxygenase, PaaI subunit; COGs: COG3396 conserved hypothetical protein; InterPro IPR007814: IPR011882; KEGG: cpi:Cpin_0789 phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; SPTR: Phenylacetate-CoA oxygenase, PaaI subunit; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: Phenylacetic acid catabolic protein; TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit.
 
     0.692
ADR20076.1
NLP/P60 protein; COGs: COG0791 Cell wall-associated hydrolase (invasion-associated protein); InterPro IPR000064; KEGG: fjo:Fjoh_4613 NLP/P60 protein; PFAM: NLP/P60 protein; SPTR: Lipoprotein; possible cell wall-associated hydrolase; PFAM: NlpC/P60 family.
       0.690
ADR20028.1
KEGG: aav:Aave_4086 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.641
ADR20072.1
Protein of unknown function DUF490; InterPro IPR007452; KEGG: dfe:Dfer_3011 hypothetical protein; PFAM: protein of unknown function DUF490; SPTR: Putative uncharacterized protein; PFAM: Family of unknown function (DUF490).
       0.580
ADR20077.1
HNH endonuclease; COGs: COG1403 Restriction endonuclease; InterPro IPR002711: IPR003615; KEGG: sli:Slin_5662 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease; PFAM: HNH endonuclease.
       0.571
ADR20892.1
Thioesterase superfamily protein; COGs: COG2050 Uncharacterized protein possibly involved in aromatic compounds catabolism; InterPro IPR006683: IPR003736; KEGG: pdi:BDI_1501 hypothetical protein; PFAM: thioesterase superfamily protein; SPTR: Putative uncharacterized protein; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.
 
     0.507
ADR21606.1
KEGG: rbi:RB2501_04160 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Cbb3-type cytochrome oxidase component FixQ.
  
     0.481
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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