STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20139.1Endonuclease/exonuclease/phosphatase; COGs: COG3568 Metal-dependent hydrolase; InterPro IPR005135; KEGG: srm:SRM_02907 endonuclease/exonuclease/phosphatase family protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Endonuclease/exonuclease/phosphatase; PFAM: Endonuclease/Exonuclease/phosphatase family. (334 aa)    
Predicted Functional Partners:
ADR20912.1
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.644
ADR22417.1
Aminotransferase class V; COGs: COG0520 Selenocysteine lyase; InterPro IPR000192; KEGG: cat:CA2559_02090 hypothetical protein; PFAM: aminotransferase class V; SPTR: Aminotransferase, class V; PFAM: Aminotransferase class-V.
    
   0.644
ADR22498.1
COGs: COG0380 Trehalose-6-phosphate synthase; InterPro IPR003337: IPR006379: IPR001830; KEGG: cpi:Cpin_4022 trehalose-phosphatase; PFAM: glycosyl transferase family 20; trehalose-phosphatase; SPTR: Trehalose-6-phosphate synthase-phosphatase; TIGRFAM: trehalose-phosphatase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Trehalose-phosphatase; Glycosyltransferase family 20; TIGRFAM: trehalose-phosphatase; alpha,alpha-trehalose-phosphate synthase [UDP-forming]; HAD-superfamily hydrolase, subfamily IIB.
   
    0.514
ADR20140.1
KEGG: bmd:BMD_0333 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.427
ADR21449.1
Hypothetical protein; InterPro IPR005242; KEGG: aas:Aasi_0622 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family (UPF0104); TIGRFAM: conserved hypothetical protein.
 
  
 0.408
ADR23704.1
Putative PAS/PAC sensor protein; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterProIPR000014: IPR000700: IPR003660: IPR003018: IPR 013767: IPR010822; KEGG: lic:LIC12324 serine/threonine kinase protein; PFAM: PAS fold domain protein; histidine kinase HAMP region domain protein; GAF domain protein; Stage II sporulation protein E; SMART: PAS domain containing protein; SPTR: Serine/threonine protein kinases; TIGRFAM: PAS sensor protein; PFAM: HAMP domain; Stage II sporulation protein E (SpoIIE); PAS fold; TIGRFAM: PAS domain S-box.
 
    0.404
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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