STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADR20165.1RagB/SusD domain protein; InterPro IPR012944: IPR019734: IPR013026; KEGG: zpr:ZPR_3693 putative outer membrane protein probably involved in nutrient binding; PFAM: RagB/SusD domain protein; SPTR: Putative outer membrane protein, probably involved in nutrient binding; PFAM: SusD family. (499 aa)    
Predicted Functional Partners:
ADR20164.1
TonB-dependent receptor plug; InterPro IPR012910; KEGG: fjo:Fjoh_2431 TonB-dependent receptor; PFAM: TonB-dependent receptor plug; SPTR: Putative outer membrane protein probably involved in nutrient binding; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
   0.964
ADR20166.1
PKD domain containing protein; InterPro IPR000601; KEGG: gfo:GFO_3466 glycosy hydrolase family protein; PFAM: PKD domain containing protein; SMART: PKD domain containing protein; SPTR: Glycosyl hydrolase, family 16; PFAM: PKD domain.
 
    0.919
ADR20163.1
Two component regulator three Y domain-containing protein; InterPro IPR011110: IPR011123: IPR013249: IPR000792; KEGG: fjo:Fjoh_4178 putative periplasmic ligand-binding sensor protein; PFAM: Two component regulator three Y domain-containing protein; Two component regulator propeller; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; SPTR: Putative periplasmic ligand-binding sensor protein; PFAM: Y_Y_Y domain; Bacterial regulatory proteins, luxR family.
 
     0.817
ADR20168.1
Glycoside hydrolase family 3 domain protein; COGs: COG1472 Beta-glucosidase-related glycosidase; InterPro IPR001764: IPR002772: IPR019800; KEGG: zpr:ZPR_3690 beta-glucosidase; PFAM: glycoside hydrolase family 3 domain protein; SPTR: Beta-glucosidase; PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain; Belongs to the glycosyl hydrolase 3 family.
    0.661
ADR20143.1
TonB-dependent receptor; InterPro IPR012910: IPR000531: IPR001412; KEGG: zpr:ZPR_2449 TonB-dependent outer membrane receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: TonB-dependent outer membrane receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor.
 
 
 0.659
ADR20167.1
Glycoside hydrolase family 16; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757: IPR000601: IPR018247; KEGG: hoh:Hoch_4545 glycoside hydrolase family 16; PFAM: glycoside hydrolase family 16; SPTR: Laminarinase; PFAM: Glycosyl hydrolases family 16.
     0.625
ADR21793.1
TonB-dependent receptor plug; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531; KEGG: bfs:BF4169 putative TonB-linked outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Putative uncharacterized protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
     0.616
ADR20733.1
TonB-dependent receptor plug; COGs: COG4771 Outer membrane receptor for ferrienterochelin and colicins; InterPro IPR018247: IPR012910: IPR000531; KEGG: sru:SRU_0358 outer membrane protein; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; SPTR: Outer membrane protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
   0.555
ADR20169.1
Glycoside hydrolase family 16; COGs: COG2273 Beta-glucanase/Beta-glucan synthetase; InterPro IPR000757; KEGG: hor:Hore_02670 glycoside hydrolase family 16; PFAM: glycoside hydrolase family 16; SPTR: Beta-glucanase; PFAM: Glycosyl hydrolases family 16.
 
     0.538
ADR21789.1
COGs: COG5368 conserved hypothetical protein; InterPro IPR016883; KEGG: rbi:RB2501_07305 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2329).
  
     0.483
Your Current Organism:
Marivirga tractuosa
NCBI taxonomy Id: 643867
Other names: Flexibacter tractuosus DSM 4126, Flexibacter tractuosus IFO 15989, M. tractuosa DSM 4126, Marivirga tractuosa DSM 4126, Marivirga tractuosa IFO 15989, Marivirga tractuosa str. DSM 4126, Marivirga tractuosa strain DSM 4126
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